Hb_047923_010

Information

Type -
Description -
Location Contig47923: 7323-8224
Sequence    

Annotation

kegg
ID cam:101498181
description genome polyprotein-like
nr
ID XP_012568598.1
description PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
swissprot
ID Q91DM0
description Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1
trembl
ID K7MRP3
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0005488
description orf i polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_047923_010 0.0 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
2 Hb_000613_270 0.0320665919 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
3 Hb_023774_010 0.0357385473 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
4 Hb_001652_050 0.0653681091 - - -
5 Hb_003086_180 0.0654792443 - - PREDICTED: RING-H2 finger protein ATL70-like [Pyrus x bretschneideri]
6 Hb_008111_020 0.0807821544 - - Receptor like protein 6, putative [Theobroma cacao]
7 Hb_002157_180 0.0896654713 - - separase, putative [Ricinus communis]
8 Hb_000059_290 0.1009341743 - - pterin-4-alpha-carbinolamine dehydratase, putative [Ricinus communis]
9 Hb_089843_010 0.1133567362 - - hypothetical protein JCGZ_05278 [Jatropha curcas]
10 Hb_000203_030 0.1241208637 - - -
11 Hb_174514_010 0.1296197784 - - flavin-containing monooxygenase family protein [Populus trichocarpa]
12 Hb_001006_200 0.1351460028 transcription factor TF Family: G2-like conserved hypothetical protein [Ricinus communis]
13 Hb_003752_130 0.1463270798 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
14 Hb_100873_040 0.1469501326 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
15 Hb_000408_010 0.164797919 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
16 Hb_000343_280 0.1663673041 - - hypothetical protein JCGZ_24094 [Jatropha curcas]
17 Hb_157122_010 0.1725737867 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
18 Hb_079158_010 0.1750430317 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
19 Hb_003085_050 0.1813255959 - - Polygalacturonase non-catalytic subunit AroGP3 precursor, putative [Ricinus communis]
20 Hb_005306_040 0.1867808624 - - calmodulin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_047923_010 Hb_047923_010 Hb_000613_270 Hb_000613_270 Hb_047923_010--Hb_000613_270 Hb_023774_010 Hb_023774_010 Hb_047923_010--Hb_023774_010 Hb_001652_050 Hb_001652_050 Hb_047923_010--Hb_001652_050 Hb_003086_180 Hb_003086_180 Hb_047923_010--Hb_003086_180 Hb_008111_020 Hb_008111_020 Hb_047923_010--Hb_008111_020 Hb_002157_180 Hb_002157_180 Hb_047923_010--Hb_002157_180 Hb_000613_270--Hb_023774_010 Hb_000613_270--Hb_003086_180 Hb_000613_270--Hb_001652_050 Hb_089843_010 Hb_089843_010 Hb_000613_270--Hb_089843_010 Hb_000613_270--Hb_002157_180 Hb_023774_010--Hb_003086_180 Hb_023774_010--Hb_001652_050 Hb_023774_010--Hb_089843_010 Hb_023774_010--Hb_002157_180 Hb_001652_050--Hb_003086_180 Hb_001652_050--Hb_002157_180 Hb_001652_050--Hb_008111_020 Hb_003086_180--Hb_089843_010 Hb_174514_010 Hb_174514_010 Hb_003086_180--Hb_174514_010 Hb_008111_020--Hb_002157_180 Hb_003752_130 Hb_003752_130 Hb_008111_020--Hb_003752_130 Hb_008111_020--Hb_000613_270 Hb_000059_290 Hb_000059_290 Hb_008111_020--Hb_000059_290 Hb_157122_010 Hb_157122_010 Hb_002157_180--Hb_157122_010 Hb_002157_180--Hb_003752_130 Hb_003085_050 Hb_003085_050 Hb_002157_180--Hb_003085_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0260465 0.0205718 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0377007 0

CAGE analysis