Hb_000613_270

Information

Type -
Description -
Location Contig613: 222482-224194
Sequence    

Annotation

kegg
ID mtr:MTR_3g043850
description hypothetical protein
nr
ID XP_012065777.1
description PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID E6NUA7
description JHL22C18.10 protein OS=Jatropha curcas GN=JHL22C18.10 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000613_270 0.0 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
2 Hb_023774_010 0.0047578899 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
3 Hb_047923_010 0.0320665919 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
4 Hb_003086_180 0.0337315186 - - PREDICTED: RING-H2 finger protein ATL70-like [Pyrus x bretschneideri]
5 Hb_001652_050 0.0526413723 - - -
6 Hb_089843_010 0.0846802825 - - hypothetical protein JCGZ_05278 [Jatropha curcas]
7 Hb_002157_180 0.1032650783 - - separase, putative [Ricinus communis]
8 Hb_174514_010 0.1046121807 - - flavin-containing monooxygenase family protein [Populus trichocarpa]
9 Hb_008111_020 0.109354815 - - Receptor like protein 6, putative [Theobroma cacao]
10 Hb_001006_200 0.1203389407 transcription factor TF Family: G2-like conserved hypothetical protein [Ricinus communis]
11 Hb_000059_290 0.1262694359 - - pterin-4-alpha-carbinolamine dehydratase, putative [Ricinus communis]
12 Hb_000203_030 0.1452978329 - - -
13 Hb_100873_040 0.1675295287 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
14 Hb_003752_130 0.1740867732 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
15 Hb_157122_010 0.1745717062 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
16 Hb_003085_050 0.1828787038 - - Polygalacturonase non-catalytic subunit AroGP3 precursor, putative [Ricinus communis]
17 Hb_079158_010 0.1850251478 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
18 Hb_000343_280 0.1886956613 - - hypothetical protein JCGZ_24094 [Jatropha curcas]
19 Hb_099198_010 0.1891053385 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 isoform X2 [Nicotiana tomentosiformis]
20 Hb_002553_100 0.1917366692 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]

Gene co-expression network

sample Hb_000613_270 Hb_000613_270 Hb_023774_010 Hb_023774_010 Hb_000613_270--Hb_023774_010 Hb_047923_010 Hb_047923_010 Hb_000613_270--Hb_047923_010 Hb_003086_180 Hb_003086_180 Hb_000613_270--Hb_003086_180 Hb_001652_050 Hb_001652_050 Hb_000613_270--Hb_001652_050 Hb_089843_010 Hb_089843_010 Hb_000613_270--Hb_089843_010 Hb_002157_180 Hb_002157_180 Hb_000613_270--Hb_002157_180 Hb_023774_010--Hb_003086_180 Hb_023774_010--Hb_047923_010 Hb_023774_010--Hb_001652_050 Hb_023774_010--Hb_089843_010 Hb_023774_010--Hb_002157_180 Hb_047923_010--Hb_001652_050 Hb_047923_010--Hb_003086_180 Hb_008111_020 Hb_008111_020 Hb_047923_010--Hb_008111_020 Hb_047923_010--Hb_002157_180 Hb_003086_180--Hb_089843_010 Hb_003086_180--Hb_001652_050 Hb_174514_010 Hb_174514_010 Hb_003086_180--Hb_174514_010 Hb_001652_050--Hb_002157_180 Hb_001652_050--Hb_008111_020 Hb_089843_010--Hb_174514_010 Hb_089843_010--Hb_047923_010 Hb_089843_010--Hb_001652_050 Hb_002157_180--Hb_008111_020 Hb_157122_010 Hb_157122_010 Hb_002157_180--Hb_157122_010 Hb_003752_130 Hb_003752_130 Hb_002157_180--Hb_003752_130 Hb_003085_050 Hb_003085_050 Hb_002157_180--Hb_003085_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0113487 0.0102014 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0196137 0

CAGE analysis