Hb_004116_100

Information

Type -
Description -
Location Contig4116: 120596-131068
Sequence    

Annotation

kegg
ID rcu:RCOM_0339600
description Isoamyl acetate-hydrolyzing esterase, putative
nr
ID XP_002533646.1
description Isoamyl acetate-hydrolyzing esterase, putative [Ricinus communis]
swissprot
ID Q9SRM5
description GDSL esterase/lipase CPRD49 OS=Arabidopsis thaliana GN=CPRD49 PE=2 SV=1
trembl
ID B9T5X7
description Isoamyl acetate-hydrolyzing esterase, putative OS=Ricinus communis GN=RCOM_0339600 PE=4 SV=1
Gene Ontology
ID GO:0048046
description gdsl esterase lipase cprd49-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004116_100 0.0 - - Isoamyl acetate-hydrolyzing esterase, putative [Ricinus communis]
2 Hb_030627_070 0.1558841945 - - histone H4 [Zea mays]
3 Hb_000740_040 0.1682510276 - - PREDICTED: uncharacterized protein LOC105126082 [Populus euphratica]
4 Hb_003077_150 0.170407045 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
5 Hb_118282_010 0.1761575881 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
6 Hb_002045_190 0.1763579616 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
7 Hb_068194_010 0.1793770461 - - hypothetical protein POPTR_0010s23740g [Populus trichocarpa]
8 Hb_000975_240 0.1834941029 - - hypothetical protein JCGZ_22006 [Jatropha curcas]
9 Hb_003399_100 0.1892285886 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
10 Hb_001073_080 0.2002117829 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
11 Hb_011053_010 0.2019908429 - - PREDICTED: uncharacterized protein LOC105631146 [Jatropha curcas]
12 Hb_001332_030 0.2024838951 - - hypothetical protein JCGZ_21111 [Jatropha curcas]
13 Hb_001329_090 0.2024871406 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000005_110 0.203671864 - - histone H2B1 [Hevea brasiliensis]
15 Hb_000008_370 0.2055304822 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
16 Hb_006275_060 0.2058319628 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
17 Hb_005375_050 0.2060504973 - - inorganic pyrophosphatase, putative [Ricinus communis]
18 Hb_000035_240 0.2062383833 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011512_160 0.2100758029 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001804_090 0.2108729041 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004116_100 Hb_004116_100 Hb_030627_070 Hb_030627_070 Hb_004116_100--Hb_030627_070 Hb_000740_040 Hb_000740_040 Hb_004116_100--Hb_000740_040 Hb_003077_150 Hb_003077_150 Hb_004116_100--Hb_003077_150 Hb_118282_010 Hb_118282_010 Hb_004116_100--Hb_118282_010 Hb_002045_190 Hb_002045_190 Hb_004116_100--Hb_002045_190 Hb_068194_010 Hb_068194_010 Hb_004116_100--Hb_068194_010 Hb_003399_100 Hb_003399_100 Hb_030627_070--Hb_003399_100 Hb_000684_120 Hb_000684_120 Hb_030627_070--Hb_000684_120 Hb_030627_070--Hb_002045_190 Hb_000005_110 Hb_000005_110 Hb_030627_070--Hb_000005_110 Hb_006275_060 Hb_006275_060 Hb_030627_070--Hb_006275_060 Hb_006445_020 Hb_006445_020 Hb_030627_070--Hb_006445_020 Hb_001073_080 Hb_001073_080 Hb_000740_040--Hb_001073_080 Hb_000740_040--Hb_118282_010 Hb_001329_090 Hb_001329_090 Hb_000740_040--Hb_001329_090 Hb_000740_040--Hb_000005_110 Hb_000035_240 Hb_000035_240 Hb_000740_040--Hb_000035_240 Hb_003126_130 Hb_003126_130 Hb_000740_040--Hb_003126_130 Hb_009771_060 Hb_009771_060 Hb_003077_150--Hb_009771_060 Hb_003077_150--Hb_001329_090 Hb_000905_120 Hb_000905_120 Hb_003077_150--Hb_000905_120 Hb_000413_060 Hb_000413_060 Hb_003077_150--Hb_000413_060 Hb_000975_240 Hb_000975_240 Hb_003077_150--Hb_000975_240 Hb_003556_030 Hb_003556_030 Hb_003077_150--Hb_003556_030 Hb_000025_370 Hb_000025_370 Hb_118282_010--Hb_000025_370 Hb_011053_010 Hb_011053_010 Hb_118282_010--Hb_011053_010 Hb_118282_010--Hb_006445_020 Hb_002909_020 Hb_002909_020 Hb_118282_010--Hb_002909_020 Hb_118282_010--Hb_001073_080 Hb_002045_190--Hb_003399_100 Hb_002045_190--Hb_006275_060 Hb_004116_120 Hb_004116_120 Hb_002045_190--Hb_004116_120 Hb_089140_090 Hb_089140_090 Hb_002045_190--Hb_089140_090 Hb_033594_040 Hb_033594_040 Hb_002045_190--Hb_033594_040 Hb_000676_020 Hb_000676_020 Hb_068194_010--Hb_000676_020 Hb_000820_140 Hb_000820_140 Hb_068194_010--Hb_000820_140 Hb_068194_010--Hb_006445_020 Hb_009851_010 Hb_009851_010 Hb_068194_010--Hb_009851_010 Hb_001102_050 Hb_001102_050 Hb_068194_010--Hb_001102_050 Hb_001322_230 Hb_001322_230 Hb_068194_010--Hb_001322_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.525748 0.239069 6.57562 0.920197 0.254951 0.33587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.16326 2.52067 0.73159 1.12489 0.996034

CAGE analysis