Hb_001975_130

Information

Type -
Description -
Location Contig1975: 125757-129143
Sequence    

Annotation

kegg
ID pop:POPTR_0006s06460g
description POPTRDRAFT_762165; hypothetical protein
nr
ID XP_011020175.1
description PREDICTED: probable galactinol--sucrose galactosyltransferase 6 isoform X1 [Populus euphratica]
swissprot
ID Q8RX87
description Probable galactinol--sucrose galactosyltransferase 6 OS=Arabidopsis thaliana GN=RFS6 PE=2 SV=2
trembl
ID B9HA87
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s06460g PE=4 SV=2
Gene Ontology
ID GO:0016787
description probable galactinol--sucrose galactosyltransferase 6 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19835: 125353-129117
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001975_130 0.0 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 6 isoform X1 [Populus euphratica]
2 Hb_033594_040 0.1701865381 - - PREDICTED: heptahelical transmembrane protein 4-like isoform X2 [Jatropha curcas]
3 Hb_002045_190 0.1828376577 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
4 Hb_089889_010 0.1918626614 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
5 Hb_089140_090 0.1923891984 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X3 [Beta vulgaris subsp. vulgaris]
6 Hb_106552_070 0.2038033795 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003399_100 0.2085957606 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
8 Hb_005375_050 0.2133105155 - - inorganic pyrophosphatase, putative [Ricinus communis]
9 Hb_000352_200 0.2235572336 - - PREDICTED: OTU domain-containing protein DDB_G0284757 isoform X1 [Jatropha curcas]
10 Hb_004116_120 0.2237498644 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
11 Hb_168440_010 0.2262971653 - - PREDICTED: peroxidase 9 [Jatropha curcas]
12 Hb_011512_160 0.2267705933 - - conserved hypothetical protein [Ricinus communis]
13 Hb_054865_010 0.2286183426 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
14 Hb_002078_120 0.2338705302 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
15 Hb_118282_010 0.2349157937 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
16 Hb_006445_020 0.2396901028 - - hypothetical protein L484_026741 [Morus notabilis]
17 Hb_000152_210 0.2410779821 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000116_020 0.2435332932 - - PREDICTED: serine acetyltransferase 2-like isoform X1 [Jatropha curcas]
19 Hb_011457_030 0.2440542906 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
20 Hb_000329_480 0.2448485352 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001975_130 Hb_001975_130 Hb_033594_040 Hb_033594_040 Hb_001975_130--Hb_033594_040 Hb_002045_190 Hb_002045_190 Hb_001975_130--Hb_002045_190 Hb_089889_010 Hb_089889_010 Hb_001975_130--Hb_089889_010 Hb_089140_090 Hb_089140_090 Hb_001975_130--Hb_089140_090 Hb_106552_070 Hb_106552_070 Hb_001975_130--Hb_106552_070 Hb_003399_100 Hb_003399_100 Hb_001975_130--Hb_003399_100 Hb_004046_060 Hb_004046_060 Hb_033594_040--Hb_004046_060 Hb_004116_120 Hb_004116_120 Hb_033594_040--Hb_004116_120 Hb_033594_040--Hb_089140_090 Hb_033594_040--Hb_002045_190 Hb_000563_440 Hb_000563_440 Hb_033594_040--Hb_000563_440 Hb_000139_280 Hb_000139_280 Hb_033594_040--Hb_000139_280 Hb_002045_190--Hb_003399_100 Hb_006275_060 Hb_006275_060 Hb_002045_190--Hb_006275_060 Hb_002045_190--Hb_004116_120 Hb_030627_070 Hb_030627_070 Hb_002045_190--Hb_030627_070 Hb_002045_190--Hb_089140_090 Hb_089889_010--Hb_003399_100 Hb_089889_010--Hb_002045_190 Hb_005375_050 Hb_005375_050 Hb_089889_010--Hb_005375_050 Hb_001890_020 Hb_001890_020 Hb_089889_010--Hb_001890_020 Hb_089889_010--Hb_030627_070 Hb_001114_170 Hb_001114_170 Hb_089140_090--Hb_001114_170 Hb_002027_440 Hb_002027_440 Hb_089140_090--Hb_002027_440 Hb_089140_090--Hb_000563_440 Hb_015807_160 Hb_015807_160 Hb_089140_090--Hb_015807_160 Hb_011457_030 Hb_011457_030 Hb_106552_070--Hb_011457_030 Hb_106552_070--Hb_089140_090 Hb_014508_010 Hb_014508_010 Hb_106552_070--Hb_014508_010 Hb_003178_020 Hb_003178_020 Hb_106552_070--Hb_003178_020 Hb_133799_010 Hb_133799_010 Hb_106552_070--Hb_133799_010 Hb_052764_070 Hb_052764_070 Hb_106552_070--Hb_052764_070 Hb_003399_100--Hb_030627_070 Hb_003399_100--Hb_006275_060 Hb_005725_150 Hb_005725_150 Hb_003399_100--Hb_005725_150 Hb_010998_050 Hb_010998_050 Hb_003399_100--Hb_010998_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.62809 10.8768 107.566 23.5809 0.562393 0.410855
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.6063 40.5541 17.445 3.0702 20.0216

CAGE analysis