Hb_002843_090

Information

Type -
Description -
Location Contig2843: 70376-76551
Sequence    

Annotation

kegg
ID rcu:RCOM_1370990
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_012090819.1
description PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FIM9
description CDPK-related kinase 4 OS=Arabidopsis thaliana GN=CRK4 PE=2 SV=1
trembl
ID A0A067JDN7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03151 PE=4 SV=1
Gene Ontology
ID GO:0004672
description cdpk-related kinase 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29753: 70326-76836
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002843_090 0.0 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
2 Hb_068347_010 0.1993583152 - - -
3 Hb_167508_010 0.2649111635 - - hypothetical protein POPTR_0001s27330g [Populus trichocarpa]
4 Hb_000842_060 0.265877686 - - PREDICTED: uncharacterized protein LOC105636760 [Jatropha curcas]
5 Hb_002232_300 0.2765567295 - - Squalene monooxygenase, putative [Ricinus communis]
6 Hb_011903_010 0.2776820097 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000984_250 0.2799052427 - - PREDICTED: uncharacterized protein LOC105630783 [Jatropha curcas]
8 Hb_013877_020 0.2820398583 - - Cytochrome P450 [Theobroma cacao]
9 Hb_000347_090 0.2827152664 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vitis vinifera]
10 Hb_054436_010 0.2836784353 - - PREDICTED: uncharacterized protein LOC105638666 [Jatropha curcas]
11 Hb_184770_010 0.2859991819 - - -
12 Hb_013124_010 0.2861130252 - - PREDICTED: (+)-neomenthol dehydrogenase-like isoform X1 [Jatropha curcas]
13 Hb_001146_090 0.2884812879 - - valacyclovir hydrolase, putative [Ricinus communis]
14 Hb_007805_020 0.2980426634 - - -
15 Hb_001944_030 0.2994318111 - - hypothetical protein POPTR_0007s06520g [Populus trichocarpa]
16 Hb_005527_080 0.3082085904 - - hypothetical protein CICLE_v10023951mg, partial [Citrus clementina]
17 Hb_021409_130 0.3091970626 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like isoform 1 [Glycine max]
18 Hb_002475_120 0.3092490968 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
19 Hb_001195_120 0.3116053954 - - oxidoreductase, putative [Ricinus communis]
20 Hb_005568_100 0.3161118251 - - vacuolar proton ATPase a3-like protein [Medicago truncatula]

Gene co-expression network

sample Hb_002843_090 Hb_002843_090 Hb_068347_010 Hb_068347_010 Hb_002843_090--Hb_068347_010 Hb_167508_010 Hb_167508_010 Hb_002843_090--Hb_167508_010 Hb_000842_060 Hb_000842_060 Hb_002843_090--Hb_000842_060 Hb_002232_300 Hb_002232_300 Hb_002843_090--Hb_002232_300 Hb_011903_010 Hb_011903_010 Hb_002843_090--Hb_011903_010 Hb_000984_250 Hb_000984_250 Hb_002843_090--Hb_000984_250 Hb_007805_020 Hb_007805_020 Hb_068347_010--Hb_007805_020 Hb_000347_090 Hb_000347_090 Hb_068347_010--Hb_000347_090 Hb_068347_010--Hb_011903_010 Hb_020549_010 Hb_020549_010 Hb_068347_010--Hb_020549_010 Hb_000982_150 Hb_000982_150 Hb_068347_010--Hb_000982_150 Hb_061466_020 Hb_061466_020 Hb_167508_010--Hb_061466_020 Hb_000003_140 Hb_000003_140 Hb_167508_010--Hb_000003_140 Hb_001214_170 Hb_001214_170 Hb_167508_010--Hb_001214_170 Hb_129459_010 Hb_129459_010 Hb_167508_010--Hb_129459_010 Hb_099990_030 Hb_099990_030 Hb_167508_010--Hb_099990_030 Hb_000189_430 Hb_000189_430 Hb_167508_010--Hb_000189_430 Hb_002986_080 Hb_002986_080 Hb_000842_060--Hb_002986_080 Hb_000138_050 Hb_000138_050 Hb_000842_060--Hb_000138_050 Hb_002475_120 Hb_002475_120 Hb_000842_060--Hb_002475_120 Hb_028207_020 Hb_028207_020 Hb_000842_060--Hb_028207_020 Hb_001195_120 Hb_001195_120 Hb_000842_060--Hb_001195_120 Hb_002596_030 Hb_002596_030 Hb_000842_060--Hb_002596_030 Hb_001767_040 Hb_001767_040 Hb_002232_300--Hb_001767_040 Hb_000684_130 Hb_000684_130 Hb_002232_300--Hb_000684_130 Hb_002232_300--Hb_002475_120 Hb_005568_100 Hb_005568_100 Hb_002232_300--Hb_005568_100 Hb_010521_020 Hb_010521_020 Hb_002232_300--Hb_010521_020 Hb_054436_010 Hb_054436_010 Hb_002232_300--Hb_054436_010 Hb_011903_010--Hb_000347_090 Hb_188411_010 Hb_188411_010 Hb_011903_010--Hb_188411_010 Hb_000663_030 Hb_000663_030 Hb_011903_010--Hb_000663_030 Hb_006502_100 Hb_006502_100 Hb_011903_010--Hb_006502_100 Hb_161023_010 Hb_161023_010 Hb_011903_010--Hb_161023_010 Hb_001952_130 Hb_001952_130 Hb_000984_250--Hb_001952_130 Hb_006915_020 Hb_006915_020 Hb_000984_250--Hb_006915_020 Hb_000789_130 Hb_000789_130 Hb_000984_250--Hb_000789_130 Hb_010531_050 Hb_010531_050 Hb_000984_250--Hb_010531_050 Hb_000733_050 Hb_000733_050 Hb_000984_250--Hb_000733_050 Hb_013016_020 Hb_013016_020 Hb_000984_250--Hb_013016_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9869 1.17968 5.749 2.18841 3.13337 0.586306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0640797 0 0.0319127 0.454475 1.06709

CAGE analysis