Hb_000794_040

Information

Type -
Description -
Location Contig794: 55006-55836
Sequence    

Annotation

kegg
ID rcu:RCOM_1278890
description RING-H2 finger protein ATL3B precursor, putative
nr
ID XP_012077915.1
description PREDICTED: RING-H2 finger protein ATL29-like [Jatropha curcas]
swissprot
ID O49691
description RING-H2 finger protein ATL29 OS=Arabidopsis thaliana GN=ATL29 PE=3 SV=1
trembl
ID A0A067KMK2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13625 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl29

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000794_040 0.0 - - PREDICTED: RING-H2 finger protein ATL29-like [Jatropha curcas]
2 Hb_001077_020 0.3131028382 - - hypothetical protein JCGZ_23832 [Jatropha curcas]
3 Hb_119960_010 0.3386688911 - - PREDICTED: pectinesterase-like [Populus euphratica]
4 Hb_009193_080 0.341468994 - - -
5 Hb_006620_080 0.3536300117 - - hypothetical protein JCGZ_12043 [Jatropha curcas]
6 Hb_011364_030 0.35647873 - - PREDICTED: U-box domain-containing protein 51 [Jatropha curcas]
7 Hb_033546_020 0.3686792849 - - xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis]
8 Hb_056559_010 0.3706677723 - - PREDICTED: uncharacterized protein LOC104088595 [Nicotiana tomentosiformis]
9 Hb_003902_080 0.3715782487 - - PREDICTED: senescence-specific cysteine protease SAG39-like [Populus euphratica]
10 Hb_006502_100 0.3761688501 - - hypothetical protein POPTR_0003s01580g [Populus trichocarpa]
11 Hb_032907_010 0.3823736282 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
12 Hb_000155_060 0.3824908468 - - ATP binding protein, putative [Ricinus communis]
13 Hb_085892_020 0.389318046 - - -
14 Hb_033870_010 0.3916670022 - - PREDICTED: uncharacterized protein LOC104101109 isoform X1 [Nicotiana tomentosiformis]
15 Hb_005298_040 0.4010087164 - - hypothetical protein CICLE_v10003181mg, partial [Citrus clementina]
16 Hb_000895_080 0.4021294163 - - PREDICTED: acyl-CoA--sterol O-acyltransferase 1-like [Jatropha curcas]
17 Hb_002847_020 0.4122241112 - - hypothetical protein JCGZ_23832 [Jatropha curcas]
18 Hb_001449_060 0.4129186852 - - kelch repeat protein, putative [Ricinus communis]
19 Hb_063907_010 0.420455344 - - -
20 Hb_001001_050 0.4251902882 - - CXE protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000794_040 Hb_000794_040 Hb_001077_020 Hb_001077_020 Hb_000794_040--Hb_001077_020 Hb_119960_010 Hb_119960_010 Hb_000794_040--Hb_119960_010 Hb_009193_080 Hb_009193_080 Hb_000794_040--Hb_009193_080 Hb_006620_080 Hb_006620_080 Hb_000794_040--Hb_006620_080 Hb_011364_030 Hb_011364_030 Hb_000794_040--Hb_011364_030 Hb_033546_020 Hb_033546_020 Hb_000794_040--Hb_033546_020 Hb_002847_020 Hb_002847_020 Hb_001077_020--Hb_002847_020 Hb_001449_060 Hb_001449_060 Hb_001077_020--Hb_001449_060 Hb_085892_020 Hb_085892_020 Hb_001077_020--Hb_085892_020 Hb_001195_080 Hb_001195_080 Hb_001077_020--Hb_001195_080 Hb_123560_030 Hb_123560_030 Hb_001077_020--Hb_123560_030 Hb_119960_010--Hb_006620_080 Hb_119960_010--Hb_011364_030 Hb_119960_010--Hb_009193_080 Hb_003902_080 Hb_003902_080 Hb_119960_010--Hb_003902_080 Hb_032907_010 Hb_032907_010 Hb_119960_010--Hb_032907_010 Hb_000116_600 Hb_000116_600 Hb_119960_010--Hb_000116_600 Hb_009193_080--Hb_003902_080 Hb_009193_080--Hb_006620_080 Hb_009193_080--Hb_011364_030 Hb_009193_080--Hb_032907_010 Hb_036693_020 Hb_036693_020 Hb_009193_080--Hb_036693_020 Hb_006620_080--Hb_011364_030 Hb_006620_080--Hb_032907_010 Hb_006620_080--Hb_003902_080 Hb_006620_080--Hb_000116_600 Hb_011364_030--Hb_032907_010 Hb_011364_030--Hb_003902_080 Hb_011364_030--Hb_000116_600 Hb_001377_300 Hb_001377_300 Hb_033546_020--Hb_001377_300 Hb_001998_170 Hb_001998_170 Hb_033546_020--Hb_001998_170 Hb_113084_010 Hb_113084_010 Hb_033546_020--Hb_113084_010 Hb_003906_020 Hb_003906_020 Hb_033546_020--Hb_003906_020 Hb_007889_020 Hb_007889_020 Hb_033546_020--Hb_007889_020 Hb_000311_040 Hb_000311_040 Hb_033546_020--Hb_000311_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.19545 0 0 0.146284 0.0261864 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0641861 0 0 0 0

CAGE analysis