Hb_001195_080

Information

Type -
Description -
Location Contig1195: 45605-45973
Sequence    

Annotation

kegg
ID rcu:RCOM_1594890
description hypothetical protein
nr
ID XP_012071889.1
description PREDICTED: uncharacterized protein LOC105633814 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L205
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05770: 42284-44658 , PASA_asmbl_05771: 45452-46285
cDNA
(Sanger)
(ID:Location)		 001_F23.ab1: 45452-46285 , 011_C10.ab1: 45452-46285

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_080 0.0 - - PREDICTED: uncharacterized protein LOC105633814 [Jatropha curcas]
2 Hb_000624_020 0.2747470195 transcription factor TF Family: NAC NAC transcription factor 004 [Jatropha curcas]
3 Hb_176844_010 0.2811116038 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
4 Hb_002847_020 0.2822836239 - - hypothetical protein JCGZ_23832 [Jatropha curcas]
5 Hb_001077_020 0.2953065446 - - hypothetical protein JCGZ_23832 [Jatropha curcas]
6 Hb_001449_060 0.3004562712 - - kelch repeat protein, putative [Ricinus communis]
7 Hb_007181_040 0.3006470943 - - -
8 Hb_000826_060 0.3042793246 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
9 Hb_000283_120 0.3124823981 - - PREDICTED: uncharacterized protein LOC105647704 [Jatropha curcas]
10 Hb_001277_160 0.3144417089 - - hypothetical protein MIMGU_mgv1a019742mg, partial [Erythranthe guttata]
11 Hb_013877_020 0.3191740612 - - Cytochrome P450 [Theobroma cacao]
12 Hb_001496_130 0.3224619118 - - -
13 Hb_000189_200 0.329359663 - - hypothetical protein JCGZ_02242 [Jatropha curcas]
14 Hb_000098_020 0.3363782979 transcription factor TF Family: GRAS GRAS family transcription factor family protein [Theobroma cacao]
15 Hb_121304_020 0.3366160347 - - -
16 Hb_005273_020 0.3369088663 - - -
17 Hb_186725_010 0.3378275041 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
18 Hb_148121_080 0.3428136472 transcription factor TF Family: C2H2 PREDICTED: protein SHOOT GRAVITROPISM 5 [Populus euphratica]
19 Hb_008096_040 0.3444979205 - - hypothetical protein PRUPE_ppa001351mg [Prunus persica]
20 Hb_010560_060 0.3451234893 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]

Gene co-expression network

sample Hb_001195_080 Hb_001195_080 Hb_000624_020 Hb_000624_020 Hb_001195_080--Hb_000624_020 Hb_176844_010 Hb_176844_010 Hb_001195_080--Hb_176844_010 Hb_002847_020 Hb_002847_020 Hb_001195_080--Hb_002847_020 Hb_001077_020 Hb_001077_020 Hb_001195_080--Hb_001077_020 Hb_001449_060 Hb_001449_060 Hb_001195_080--Hb_001449_060 Hb_007181_040 Hb_007181_040 Hb_001195_080--Hb_007181_040 Hb_121304_020 Hb_121304_020 Hb_000624_020--Hb_121304_020 Hb_000663_030 Hb_000663_030 Hb_000624_020--Hb_000663_030 Hb_002400_370 Hb_002400_370 Hb_000624_020--Hb_002400_370 Hb_004968_010 Hb_004968_010 Hb_000624_020--Hb_004968_010 Hb_010423_010 Hb_010423_010 Hb_000624_020--Hb_010423_010 Hb_010770_010 Hb_010770_010 Hb_176844_010--Hb_010770_010 Hb_000815_140 Hb_000815_140 Hb_176844_010--Hb_000815_140 Hb_000046_410 Hb_000046_410 Hb_176844_010--Hb_000046_410 Hb_013877_020 Hb_013877_020 Hb_176844_010--Hb_013877_020 Hb_012384_050 Hb_012384_050 Hb_176844_010--Hb_012384_050 Hb_087221_010 Hb_087221_010 Hb_176844_010--Hb_087221_010 Hb_002847_020--Hb_001077_020 Hb_002847_020--Hb_001449_060 Hb_002847_020--Hb_010770_010 Hb_002847_020--Hb_176844_010 Hb_002847_020--Hb_000624_020 Hb_001077_020--Hb_001449_060 Hb_085892_020 Hb_085892_020 Hb_001077_020--Hb_085892_020 Hb_123560_030 Hb_123560_030 Hb_001077_020--Hb_123560_030 Hb_000794_040 Hb_000794_040 Hb_001077_020--Hb_000794_040 Hb_003098_010 Hb_003098_010 Hb_001449_060--Hb_003098_010 Hb_005730_130 Hb_005730_130 Hb_001449_060--Hb_005730_130 Hb_076038_010 Hb_076038_010 Hb_001449_060--Hb_076038_010 Hb_000311_030 Hb_000311_030 Hb_001449_060--Hb_000311_030 Hb_007101_010 Hb_007101_010 Hb_007181_040--Hb_007101_010 Hb_008096_040 Hb_008096_040 Hb_007181_040--Hb_008096_040 Hb_006120_110 Hb_006120_110 Hb_007181_040--Hb_006120_110 Hb_000826_060 Hb_000826_060 Hb_007181_040--Hb_000826_060 Hb_000538_150 Hb_000538_150 Hb_007181_040--Hb_000538_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.20878 2.46643 1.09868 2.21546 0.54513 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.7106 0.674669 0 0.785919 0.50481

CAGE analysis