Hb_006120_110

Information

Type -
Description -
Location Contig6120: 51408-55643
Sequence    

Annotation

kegg
ID rcu:RCOM_1001800
description hypothetical protein
nr
ID XP_002519271.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RZV2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1001800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006120_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007181_040 0.2670764402 - - -
3 Hb_073973_140 0.2725519446 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
4 Hb_001454_240 0.2742594214 - - translationally controlled tumor protein [Hevea brasiliensis]
5 Hb_024682_020 0.2765391459 - - hypothetical protein POPTR_0001s12710g [Populus trichocarpa]
6 Hb_002272_010 0.2786730761 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000270_440 0.2873166775 transcription factor TF Family: Orphans hypothetical protein POPTR_0015s08130g [Populus trichocarpa]
8 Hb_001001_030 0.2913074551 - - hypothetical protein POPTR_0014s03230g [Populus trichocarpa]
9 Hb_009493_010 0.2924823082 - - Minor allergen Alt a, putative [Ricinus communis]
10 Hb_012753_130 0.2953023407 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000649_240 0.297850619 - - PREDICTED: probable peroxygenase 4 [Jatropha curcas]
12 Hb_009222_020 0.2979279926 - - hypothetical protein AALP_AA5G087000 [Arabis alpina]
13 Hb_000224_100 0.2988348041 - - -
14 Hb_002798_060 0.3001336519 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera]
15 Hb_005700_010 0.3008823999 - - PREDICTED: uncharacterized protein LOC104898079 [Beta vulgaris subsp. vulgaris]
16 Hb_001922_190 0.3028094457 - - RecName: Full=Hevamine-A; Includes: RecName: Full=Chitinase; Includes: RecName: Full=Lysozyme; Flags: Precursor [Hevea brasiliensis]
17 Hb_024879_010 0.3030710388 - - unknown [Glycine max]
18 Hb_000635_140 0.3045656382 transcription factor TF Family: NF-YC DNA binding protein, putative [Ricinus communis]
19 Hb_001481_120 0.305569264 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
20 Hb_010050_050 0.3074833691 - - PREDICTED: piezo-type mechanosensitive ion channel homolog isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_006120_110 Hb_006120_110 Hb_007181_040 Hb_007181_040 Hb_006120_110--Hb_007181_040 Hb_073973_140 Hb_073973_140 Hb_006120_110--Hb_073973_140 Hb_001454_240 Hb_001454_240 Hb_006120_110--Hb_001454_240 Hb_024682_020 Hb_024682_020 Hb_006120_110--Hb_024682_020 Hb_002272_010 Hb_002272_010 Hb_006120_110--Hb_002272_010 Hb_000270_440 Hb_000270_440 Hb_006120_110--Hb_000270_440 Hb_007101_010 Hb_007101_010 Hb_007181_040--Hb_007101_010 Hb_008096_040 Hb_008096_040 Hb_007181_040--Hb_008096_040 Hb_001195_080 Hb_001195_080 Hb_007181_040--Hb_001195_080 Hb_000826_060 Hb_000826_060 Hb_007181_040--Hb_000826_060 Hb_000538_150 Hb_000538_150 Hb_007181_040--Hb_000538_150 Hb_003376_360 Hb_003376_360 Hb_073973_140--Hb_003376_360 Hb_009879_010 Hb_009879_010 Hb_073973_140--Hb_009879_010 Hb_000005_330 Hb_000005_330 Hb_073973_140--Hb_000005_330 Hb_001143_170 Hb_001143_170 Hb_073973_140--Hb_001143_170 Hb_002119_060 Hb_002119_060 Hb_073973_140--Hb_002119_060 Hb_000049_120 Hb_000049_120 Hb_073973_140--Hb_000049_120 Hb_001584_310 Hb_001584_310 Hb_001454_240--Hb_001584_310 Hb_011360_010 Hb_011360_010 Hb_001454_240--Hb_011360_010 Hb_000023_200 Hb_000023_200 Hb_001454_240--Hb_000023_200 Hb_004324_340 Hb_004324_340 Hb_001454_240--Hb_004324_340 Hb_173953_010 Hb_173953_010 Hb_001454_240--Hb_173953_010 Hb_000703_240 Hb_000703_240 Hb_001454_240--Hb_000703_240 Hb_034688_020 Hb_034688_020 Hb_024682_020--Hb_034688_020 Hb_005356_040 Hb_005356_040 Hb_024682_020--Hb_005356_040 Hb_000649_240 Hb_000649_240 Hb_024682_020--Hb_000649_240 Hb_001146_010 Hb_001146_010 Hb_024682_020--Hb_001146_010 Hb_002577_010 Hb_002577_010 Hb_024682_020--Hb_002577_010 Hb_010050_050 Hb_010050_050 Hb_024682_020--Hb_010050_050 Hb_006096_010 Hb_006096_010 Hb_002272_010--Hb_006096_010 Hb_000486_070 Hb_000486_070 Hb_002272_010--Hb_000486_070 Hb_009233_030 Hb_009233_030 Hb_002272_010--Hb_009233_030 Hb_000256_130 Hb_000256_130 Hb_002272_010--Hb_000256_130 Hb_003225_030 Hb_003225_030 Hb_002272_010--Hb_003225_030 Hb_002272_010--Hb_000649_240 Hb_005653_060 Hb_005653_060 Hb_000270_440--Hb_005653_060 Hb_001021_130 Hb_001021_130 Hb_000270_440--Hb_001021_130 Hb_009510_040 Hb_009510_040 Hb_000270_440--Hb_009510_040 Hb_006018_040 Hb_006018_040 Hb_000270_440--Hb_006018_040 Hb_002042_130 Hb_002042_130 Hb_000270_440--Hb_002042_130 Hb_003647_060 Hb_003647_060 Hb_000270_440--Hb_003647_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0940395 0.0689086 0 0.0761053 0.0285829 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0693987 0.0546045 0.0344948 0.0144858 0

CAGE analysis