Hb_003376_360

Information

Type -
Description -
Location Contig3376: 237717-238016
Sequence    

Annotation

kegg
ID rcu:RCOM_1355790
description hypothetical protein
nr
ID XP_010253697.1
description PREDICTED: ubiquitin-like protein 5 [Nelumbo nucifera]
swissprot
ID Q9FGZ9
description Ubiquitin-like protein 5 OS=Arabidopsis thaliana GN=UBL5 PE=3 SV=1
trembl
ID B9S0L3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1355790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35362: 237638-240576
cDNA
(Sanger)
(ID:Location)		 007_I08.ab1: 237743-240551 , 013_O23.ab1: 237725-240528 , 019_H20.ab1: 237725-240528 , 035_D23.ab1: 237725-240528 , 044_M19.ab1: 237743-240551 , 045_N06.ab1: 237707-240540

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_360 0.0 - - PREDICTED: ubiquitin-like protein 5 [Nelumbo nucifera]
2 Hb_000062_550 0.0922583738 - - PREDICTED: OTU domain-containing protein At3g57810-like isoform X1 [Jatropha curcas]
3 Hb_000300_640 0.1098218222 - - PREDICTED: uncharacterized protein LOC100855285 [Vitis vinifera]
4 Hb_004218_150 0.1139429329 - - electron transporter, putative [Ricinus communis]
5 Hb_000031_060 0.1150029306 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
6 Hb_000127_130 0.1186106039 - - PREDICTED: uncharacterized protein LOC105635483 [Jatropha curcas]
7 Hb_006400_040 0.1209942762 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
8 Hb_000802_080 0.1214327257 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
9 Hb_106724_020 0.123275851 - - PREDICTED: actin-related protein 2/3 complex subunit 1A-like isoform X1 [Populus euphratica]
10 Hb_002027_260 0.1244905012 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
11 Hb_005000_210 0.1248998546 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
12 Hb_005993_020 0.1273430293 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
13 Hb_010172_080 0.1284255724 - - acetylglucosaminyltransferase, putative [Ricinus communis]
14 Hb_000630_050 0.1284774603 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000109_160 0.1290772619 - - hypothetical protein PRUPE_ppa012786mg [Prunus persica]
16 Hb_002078_130 0.1291629355 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
17 Hb_000000_460 0.1294833976 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
18 Hb_000926_330 0.1299555223 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
19 Hb_003994_180 0.1300469732 - - PREDICTED: probable mitochondrial adenine nucleotide transporter BTL1 [Jatropha curcas]
20 Hb_000099_080 0.1309602515 - - kinesin light chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_003376_360 Hb_003376_360 Hb_000062_550 Hb_000062_550 Hb_003376_360--Hb_000062_550 Hb_000300_640 Hb_000300_640 Hb_003376_360--Hb_000300_640 Hb_004218_150 Hb_004218_150 Hb_003376_360--Hb_004218_150 Hb_000031_060 Hb_000031_060 Hb_003376_360--Hb_000031_060 Hb_000127_130 Hb_000127_130 Hb_003376_360--Hb_000127_130 Hb_006400_040 Hb_006400_040 Hb_003376_360--Hb_006400_040 Hb_000062_550--Hb_000300_640 Hb_000005_260 Hb_000005_260 Hb_000062_550--Hb_000005_260 Hb_000802_080 Hb_000802_080 Hb_000062_550--Hb_000802_080 Hb_005064_060 Hb_005064_060 Hb_000062_550--Hb_005064_060 Hb_001366_190 Hb_001366_190 Hb_000062_550--Hb_001366_190 Hb_000300_640--Hb_001366_190 Hb_000300_640--Hb_000802_080 Hb_002685_020 Hb_002685_020 Hb_000300_640--Hb_002685_020 Hb_000705_210 Hb_000705_210 Hb_000300_640--Hb_000705_210 Hb_000700_110 Hb_000700_110 Hb_000300_640--Hb_000700_110 Hb_000392_070 Hb_000392_070 Hb_004218_150--Hb_000392_070 Hb_004218_150--Hb_006400_040 Hb_116349_160 Hb_116349_160 Hb_004218_150--Hb_116349_160 Hb_002027_260 Hb_002027_260 Hb_004218_150--Hb_002027_260 Hb_005306_110 Hb_005306_110 Hb_004218_150--Hb_005306_110 Hb_000139_410 Hb_000139_410 Hb_004218_150--Hb_000139_410 Hb_000445_180 Hb_000445_180 Hb_000031_060--Hb_000445_180 Hb_011671_430 Hb_011671_430 Hb_000031_060--Hb_011671_430 Hb_000031_060--Hb_000127_130 Hb_000521_320 Hb_000521_320 Hb_000031_060--Hb_000521_320 Hb_000059_330 Hb_000059_330 Hb_000031_060--Hb_000059_330 Hb_003092_040 Hb_003092_040 Hb_000031_060--Hb_003092_040 Hb_002256_030 Hb_002256_030 Hb_000127_130--Hb_002256_030 Hb_002685_010 Hb_002685_010 Hb_000127_130--Hb_002685_010 Hb_109092_010 Hb_109092_010 Hb_000127_130--Hb_109092_010 Hb_000127_130--Hb_000139_410 Hb_001488_070 Hb_001488_070 Hb_000127_130--Hb_001488_070 Hb_006400_040--Hb_002027_260 Hb_001584_330 Hb_001584_330 Hb_006400_040--Hb_001584_330 Hb_001623_420 Hb_001623_420 Hb_006400_040--Hb_001623_420 Hb_006400_040--Hb_005306_110 Hb_012634_010 Hb_012634_010 Hb_006400_040--Hb_012634_010 Hb_000340_510 Hb_000340_510 Hb_006400_040--Hb_000340_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1543.39 765.196 222.423 1101.62 1225.62 764.898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1222.07 968.515 1052.33 632.493 254.93

CAGE analysis