Hb_000005_260

Information

Type -
Description -
Location Contig5: 309776-311484
Sequence    

Annotation

kegg
ID rcu:RCOM_0474160
description transferase, putative
nr
ID XP_002523710.1
description transferase, putative [Ricinus communis]
swissprot
ID Q9ZUV3
description Probable glucuronoxylan glucuronosyltransferase IRX7 OS=Arabidopsis thaliana GN=IRX7 PE=2 SV=1
trembl
ID B9SCJ1
description Transferase, putative OS=Ricinus communis GN=RCOM_0474160 PE=4 SV=1
Gene Ontology
ID GO:0015020
description probable glucuronoxylan glucuronosyltransferase irx7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45705: 309622-312086
cDNA
(Sanger)
(ID:Location)		 004_G18.ab1: 309910-310941 , 037_L19.ab1: 309682-310604 , 048_O23.ab1: 309682-310481

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_260 0.0 - - transferase, putative [Ricinus communis]
2 Hb_000062_550 0.0839404204 - - PREDICTED: OTU domain-containing protein At3g57810-like isoform X1 [Jatropha curcas]
3 Hb_001097_050 0.1172772455 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_029879_110 0.1213739114 - - PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Jatropha curcas]
5 Hb_109092_010 0.122105629 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
6 Hb_002982_040 0.1243604163 - - mta/sah nucleosidase, putative [Ricinus communis]
7 Hb_000347_180 0.1252207463 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
8 Hb_002045_240 0.1274191324 - - 2-methyl-6-phytylbenzoquinone methyltranferase [Hevea brasiliensis]
9 Hb_001663_030 0.1277347993 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
10 Hb_000003_480 0.1278494666 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
11 Hb_000802_080 0.1291314472 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
12 Hb_000245_130 0.1296539265 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
13 Hb_007741_020 0.13062785 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
14 Hb_005064_060 0.1307616678 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000077_090 0.1320655082 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000300_640 0.1327226103 - - PREDICTED: uncharacterized protein LOC100855285 [Vitis vinifera]
17 Hb_000031_220 0.1327804096 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
18 Hb_002163_030 0.1327948292 - - PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform [Jatropha curcas]
19 Hb_002255_030 0.1337880435 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
20 Hb_001019_230 0.1347725166 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Jatropha curcas]

Gene co-expression network

sample Hb_000005_260 Hb_000005_260 Hb_000062_550 Hb_000062_550 Hb_000005_260--Hb_000062_550 Hb_001097_050 Hb_001097_050 Hb_000005_260--Hb_001097_050 Hb_029879_110 Hb_029879_110 Hb_000005_260--Hb_029879_110 Hb_109092_010 Hb_109092_010 Hb_000005_260--Hb_109092_010 Hb_002982_040 Hb_002982_040 Hb_000005_260--Hb_002982_040 Hb_000347_180 Hb_000347_180 Hb_000005_260--Hb_000347_180 Hb_000300_640 Hb_000300_640 Hb_000062_550--Hb_000300_640 Hb_000802_080 Hb_000802_080 Hb_000062_550--Hb_000802_080 Hb_003376_360 Hb_003376_360 Hb_000062_550--Hb_003376_360 Hb_005064_060 Hb_005064_060 Hb_000062_550--Hb_005064_060 Hb_001366_190 Hb_001366_190 Hb_000062_550--Hb_001366_190 Hb_000099_080 Hb_000099_080 Hb_001097_050--Hb_000099_080 Hb_002045_240 Hb_002045_240 Hb_001097_050--Hb_002045_240 Hb_001097_050--Hb_000347_180 Hb_001538_130 Hb_001538_130 Hb_001097_050--Hb_001538_130 Hb_002477_280 Hb_002477_280 Hb_001097_050--Hb_002477_280 Hb_000365_390 Hb_000365_390 Hb_001097_050--Hb_000365_390 Hb_000220_220 Hb_000220_220 Hb_029879_110--Hb_000220_220 Hb_000116_440 Hb_000116_440 Hb_029879_110--Hb_000116_440 Hb_004310_030 Hb_004310_030 Hb_029879_110--Hb_004310_030 Hb_029879_110--Hb_000062_550 Hb_029879_110--Hb_005064_060 Hb_011883_010 Hb_011883_010 Hb_029879_110--Hb_011883_010 Hb_000109_160 Hb_000109_160 Hb_109092_010--Hb_000109_160 Hb_000245_130 Hb_000245_130 Hb_109092_010--Hb_000245_130 Hb_000127_130 Hb_000127_130 Hb_109092_010--Hb_000127_130 Hb_020956_020 Hb_020956_020 Hb_109092_010--Hb_020956_020 Hb_096563_010 Hb_096563_010 Hb_109092_010--Hb_096563_010 Hb_001252_010 Hb_001252_010 Hb_109092_010--Hb_001252_010 Hb_000031_220 Hb_000031_220 Hb_002982_040--Hb_000031_220 Hb_050455_010 Hb_050455_010 Hb_002982_040--Hb_050455_010 Hb_185830_020 Hb_185830_020 Hb_002982_040--Hb_185830_020 Hb_187739_020 Hb_187739_020 Hb_002982_040--Hb_187739_020 Hb_000866_030 Hb_000866_030 Hb_002982_040--Hb_000866_030 Hb_000069_160 Hb_000069_160 Hb_002982_040--Hb_000069_160 Hb_000457_260 Hb_000457_260 Hb_000347_180--Hb_000457_260 Hb_123352_020 Hb_123352_020 Hb_000347_180--Hb_123352_020 Hb_002255_030 Hb_002255_030 Hb_000347_180--Hb_002255_030 Hb_004935_030 Hb_004935_030 Hb_000347_180--Hb_004935_030 Hb_001377_270 Hb_001377_270 Hb_000347_180--Hb_001377_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
114.336 84.6714 7.29724 77.4512 78.0652 122.739
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
112.282 76.9855 54.3161 46.6988 57.1562

CAGE analysis