Hb_024682_020

Information

Type -
Description -
Location Contig24682: 23094-23900
Sequence    

Annotation

kegg
ID pop:POPTR_0001s12710g
description POPTRDRAFT_548132; hypothetical protein
nr
ID XP_002297893.1
description hypothetical protein POPTR_0001s12710g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GMW4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s12710g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25627: 23259-24080
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024682_020 0.0 - - hypothetical protein POPTR_0001s12710g [Populus trichocarpa]
2 Hb_034688_020 0.1663617591 - - PREDICTED: uncharacterized protein LOC105642050 [Jatropha curcas]
3 Hb_005356_040 0.1763902076 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
4 Hb_000649_240 0.1789911479 - - PREDICTED: probable peroxygenase 4 [Jatropha curcas]
5 Hb_001146_010 0.1793464826 - - cystathionine gamma-synthase, putative [Ricinus communis]
6 Hb_002577_010 0.1956903539 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
7 Hb_010050_050 0.1980135816 - - PREDICTED: piezo-type mechanosensitive ion channel homolog isoform X2 [Jatropha curcas]
8 Hb_028487_140 0.199867774 - - PREDICTED: myosin-binding protein 2 [Jatropha curcas]
9 Hb_005074_030 0.2006806971 - - -
10 Hb_000430_020 0.2011487278 - - -
11 Hb_000007_140 0.2015132404 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570 [Jatropha curcas]
12 Hb_000465_270 0.2018933155 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000392_310 0.2040877237 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001619_040 0.2050570414 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
15 Hb_000649_130 0.2081077088 - - Polcalcin Jun o, putative [Ricinus communis]
16 Hb_000749_050 0.2082542122 - - mitochondrial thioredoxin [Hevea brasiliensis]
17 Hb_003014_020 0.2126636815 - - electron transporter, putative [Ricinus communis]
18 Hb_006441_020 0.2177248566 - - PREDICTED: cadmium/zinc-transporting ATPase HMA3-like isoform X2 [Populus euphratica]
19 Hb_000173_470 0.2193651658 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]
20 Hb_000066_090 0.219772058 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]

Gene co-expression network

sample Hb_024682_020 Hb_024682_020 Hb_034688_020 Hb_034688_020 Hb_024682_020--Hb_034688_020 Hb_005356_040 Hb_005356_040 Hb_024682_020--Hb_005356_040 Hb_000649_240 Hb_000649_240 Hb_024682_020--Hb_000649_240 Hb_001146_010 Hb_001146_010 Hb_024682_020--Hb_001146_010 Hb_002577_010 Hb_002577_010 Hb_024682_020--Hb_002577_010 Hb_010050_050 Hb_010050_050 Hb_024682_020--Hb_010050_050 Hb_034688_020--Hb_001146_010 Hb_000749_050 Hb_000749_050 Hb_034688_020--Hb_000749_050 Hb_000538_230 Hb_000538_230 Hb_034688_020--Hb_000538_230 Hb_005074_030 Hb_005074_030 Hb_034688_020--Hb_005074_030 Hb_000430_020 Hb_000430_020 Hb_034688_020--Hb_000430_020 Hb_000173_470 Hb_000173_470 Hb_034688_020--Hb_000173_470 Hb_000465_270 Hb_000465_270 Hb_005356_040--Hb_000465_270 Hb_000928_110 Hb_000928_110 Hb_005356_040--Hb_000928_110 Hb_000007_140 Hb_000007_140 Hb_005356_040--Hb_000007_140 Hb_000110_140 Hb_000110_140 Hb_005356_040--Hb_000110_140 Hb_004800_100 Hb_004800_100 Hb_005356_040--Hb_004800_100 Hb_001504_330 Hb_001504_330 Hb_005356_040--Hb_001504_330 Hb_021888_050 Hb_021888_050 Hb_000649_240--Hb_021888_050 Hb_000432_040 Hb_000432_040 Hb_000649_240--Hb_000432_040 Hb_028487_020 Hb_028487_020 Hb_000649_240--Hb_028487_020 Hb_002097_200 Hb_002097_200 Hb_000649_240--Hb_002097_200 Hb_006788_140 Hb_006788_140 Hb_000649_240--Hb_006788_140 Hb_000451_070 Hb_000451_070 Hb_000649_240--Hb_000451_070 Hb_028487_140 Hb_028487_140 Hb_001146_010--Hb_028487_140 Hb_000061_120 Hb_000061_120 Hb_001146_010--Hb_000061_120 Hb_000152_330 Hb_000152_330 Hb_001146_010--Hb_000152_330 Hb_001146_010--Hb_000538_230 Hb_001146_010--Hb_000749_050 Hb_074783_010 Hb_074783_010 Hb_002577_010--Hb_074783_010 Hb_004328_040 Hb_004328_040 Hb_002577_010--Hb_004328_040 Hb_003647_060 Hb_003647_060 Hb_002577_010--Hb_003647_060 Hb_002577_010--Hb_000007_140 Hb_004200_020 Hb_004200_020 Hb_002577_010--Hb_004200_020 Hb_165669_010 Hb_165669_010 Hb_002577_010--Hb_165669_010 Hb_000975_360 Hb_000975_360 Hb_010050_050--Hb_000975_360 Hb_000649_130 Hb_000649_130 Hb_010050_050--Hb_000649_130 Hb_010050_050--Hb_021888_050 Hb_001856_200 Hb_001856_200 Hb_010050_050--Hb_001856_200 Hb_008643_200 Hb_008643_200 Hb_010050_050--Hb_008643_200 Hb_003972_080 Hb_003972_080 Hb_010050_050--Hb_003972_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.42318 2.80115 0.20428 3.01075 0.541796 0.0349715
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.73451 2.41297 2.56399 1.25232 0.843119

CAGE analysis