Hb_000270_440

Information

Type transcription factor
Description TF Family: Orphans
Location Contig270: 322060-323664
Sequence    

Annotation

kegg
ID pop:POPTR_0015s08130g
description POPTRDRAFT_824636A, POPTRDRAFT_824636B; hypothetical protein
nr
ID XP_002322144.1
description hypothetical protein POPTR_0015s08130g [Populus trichocarpa]
swissprot
ID Q9ZWS6
description Two-component response regulator ARR6 OS=Arabidopsis thaliana GN=ARR6 PE=1 SV=2
trembl
ID B9IEK8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s08130g PE=4 SV=1
Gene Ontology
ID GO:0005622
description two-component response regulator arr5-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28219: 322456-323345
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_440 0.0 transcription factor TF Family: Orphans hypothetical protein POPTR_0015s08130g [Populus trichocarpa]
2 Hb_005653_060 0.1584158716 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Jatropha curcas]
3 Hb_001021_130 0.1640526915 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
4 Hb_009510_040 0.1682957141 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
5 Hb_006018_040 0.168632489 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
6 Hb_002042_130 0.1725908091 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
7 Hb_003647_060 0.1735215985 - - PREDICTED: uncharacterized protein LOC105646679 isoform X2 [Jatropha curcas]
8 Hb_000000_460 0.1764295754 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
9 Hb_001564_080 0.1765553761 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
10 Hb_074783_010 0.1772624203 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
11 Hb_001481_120 0.178011387 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
12 Hb_008771_030 0.178778295 - - PREDICTED: uncharacterized protein LOC105642119 isoform X2 [Jatropha curcas]
13 Hb_029904_030 0.179592721 - - aspartate aminotransferase, putative [Ricinus communis]
14 Hb_000221_210 0.1796584186 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
15 Hb_000915_160 0.1796917216 - - PREDICTED: histone H1 [Jatropha curcas]
16 Hb_000517_040 0.1811352987 - - PREDICTED: protein argonaute 16 isoform X1 [Jatropha curcas]
17 Hb_001247_100 0.1811803393 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
18 Hb_034688_020 0.181680994 - - PREDICTED: uncharacterized protein LOC105642050 [Jatropha curcas]
19 Hb_001195_330 0.1817866567 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000329_630 0.1823631456 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_440 Hb_000270_440 Hb_005653_060 Hb_005653_060 Hb_000270_440--Hb_005653_060 Hb_001021_130 Hb_001021_130 Hb_000270_440--Hb_001021_130 Hb_009510_040 Hb_009510_040 Hb_000270_440--Hb_009510_040 Hb_006018_040 Hb_006018_040 Hb_000270_440--Hb_006018_040 Hb_002042_130 Hb_002042_130 Hb_000270_440--Hb_002042_130 Hb_003647_060 Hb_003647_060 Hb_000270_440--Hb_003647_060 Hb_005551_050 Hb_005551_050 Hb_005653_060--Hb_005551_050 Hb_000635_180 Hb_000635_180 Hb_005653_060--Hb_000635_180 Hb_001564_080 Hb_001564_080 Hb_005653_060--Hb_001564_080 Hb_007426_180 Hb_007426_180 Hb_005653_060--Hb_007426_180 Hb_000221_210 Hb_000221_210 Hb_005653_060--Hb_000221_210 Hb_003747_220 Hb_003747_220 Hb_005653_060--Hb_003747_220 Hb_010174_060 Hb_010174_060 Hb_001021_130--Hb_010174_060 Hb_001021_130--Hb_003647_060 Hb_007508_090 Hb_007508_090 Hb_001021_130--Hb_007508_090 Hb_074783_010 Hb_074783_010 Hb_001021_130--Hb_074783_010 Hb_000189_560 Hb_000189_560 Hb_001021_130--Hb_000189_560 Hb_001969_090 Hb_001969_090 Hb_001021_130--Hb_001969_090 Hb_165669_010 Hb_165669_010 Hb_009510_040--Hb_165669_010 Hb_000243_140 Hb_000243_140 Hb_009510_040--Hb_000243_140 Hb_000503_050 Hb_000503_050 Hb_009510_040--Hb_000503_050 Hb_000003_050 Hb_000003_050 Hb_009510_040--Hb_000003_050 Hb_002577_010 Hb_002577_010 Hb_009510_040--Hb_002577_010 Hb_000419_060 Hb_000419_060 Hb_009510_040--Hb_000419_060 Hb_000649_320 Hb_000649_320 Hb_006018_040--Hb_000649_320 Hb_006018_040--Hb_000635_180 Hb_006018_040--Hb_005653_060 Hb_003185_080 Hb_003185_080 Hb_006018_040--Hb_003185_080 Hb_000120_330 Hb_000120_330 Hb_006018_040--Hb_000120_330 Hb_001143_130 Hb_001143_130 Hb_006018_040--Hb_001143_130 Hb_000538_230 Hb_000538_230 Hb_002042_130--Hb_000538_230 Hb_000302_260 Hb_000302_260 Hb_002042_130--Hb_000302_260 Hb_034688_020 Hb_034688_020 Hb_002042_130--Hb_034688_020 Hb_000649_110 Hb_000649_110 Hb_002042_130--Hb_000649_110 Hb_001159_110 Hb_001159_110 Hb_002042_130--Hb_001159_110 Hb_005074_030 Hb_005074_030 Hb_002042_130--Hb_005074_030 Hb_003647_060--Hb_074783_010 Hb_003647_060--Hb_007508_090 Hb_000646_050 Hb_000646_050 Hb_003647_060--Hb_000646_050 Hb_005396_150 Hb_005396_150 Hb_003647_060--Hb_005396_150 Hb_000710_060 Hb_000710_060 Hb_003647_060--Hb_000710_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.7668 27.5225 5.24801 15.3503 4.80552 8.27047
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.9046 28.5738 17.5436 15.2161 7.33079

CAGE analysis