Hb_143933_010

Information

Type -
Description -
Location Contig143933: 766-1053
Sequence    

Annotation

kegg
ID sot:102578701
description putative disease resistance protein RGA1-like
nr
ID XP_012086122.1
description PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
swissprot
ID Q7XBQ9
description Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1
trembl
ID A0A067K2J5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21062 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143933_010 0.0 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
2 Hb_130739_010 0.1083273729 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
3 Hb_158349_010 0.1271283618 - - plastid CUL1 [Hevea brasiliensis]
4 Hb_020805_160 0.1396008979 - - -
5 Hb_002965_180 0.1757697135 - - AMSH-like ubiquitin thioesterase 3 [Morus notabilis]
6 Hb_071079_060 0.2033784204 - - PREDICTED: uncharacterized protein LOC105113464 [Populus euphratica]
7 Hb_047560_010 0.2064026989 - - PREDICTED: GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
8 Hb_005001_010 0.21654773 - - GAST1 protein precursor, putative [Ricinus communis]
9 Hb_002659_110 0.2174241072 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
10 Hb_091336_010 0.2350007134 - - -
11 Hb_101370_010 0.2389087058 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
12 Hb_113676_010 0.2391894906 - - PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
13 Hb_002597_030 0.2489014488 - - -
14 Hb_011671_360 0.2502340166 - - Hyoscyamine 6-dioxygenase, putative [Ricinus communis]
15 Hb_009851_040 0.2502569215 - - conserved hypothetical protein [Ricinus communis]
16 Hb_144547_010 0.252473507 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
17 Hb_104855_010 0.2531628912 - - -
18 Hb_000072_010 0.2537921074 - - hypothetical protein B456_006G246700 [Gossypium raimondii]
19 Hb_003073_060 0.2556552368 - - -
20 Hb_182625_010 0.2557475656 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]

Gene co-expression network

sample Hb_143933_010 Hb_143933_010 Hb_130739_010 Hb_130739_010 Hb_143933_010--Hb_130739_010 Hb_158349_010 Hb_158349_010 Hb_143933_010--Hb_158349_010 Hb_020805_160 Hb_020805_160 Hb_143933_010--Hb_020805_160 Hb_002965_180 Hb_002965_180 Hb_143933_010--Hb_002965_180 Hb_071079_060 Hb_071079_060 Hb_143933_010--Hb_071079_060 Hb_047560_010 Hb_047560_010 Hb_143933_010--Hb_047560_010 Hb_130739_010--Hb_071079_060 Hb_130739_010--Hb_002965_180 Hb_130739_010--Hb_020805_160 Hb_002659_110 Hb_002659_110 Hb_130739_010--Hb_002659_110 Hb_130739_010--Hb_158349_010 Hb_158349_010--Hb_002965_180 Hb_113676_010 Hb_113676_010 Hb_158349_010--Hb_113676_010 Hb_091336_010 Hb_091336_010 Hb_158349_010--Hb_091336_010 Hb_101370_010 Hb_101370_010 Hb_158349_010--Hb_101370_010 Hb_020805_160--Hb_071079_060 Hb_119600_020 Hb_119600_020 Hb_020805_160--Hb_119600_020 Hb_005001_010 Hb_005001_010 Hb_020805_160--Hb_005001_010 Hb_009851_040 Hb_009851_040 Hb_020805_160--Hb_009851_040 Hb_002965_180--Hb_002659_110 Hb_002965_180--Hb_071079_060 Hb_053073_010 Hb_053073_010 Hb_002965_180--Hb_053073_010 Hb_004204_040 Hb_004204_040 Hb_071079_060--Hb_004204_040 Hb_001810_050 Hb_001810_050 Hb_071079_060--Hb_001810_050 Hb_012640_010 Hb_012640_010 Hb_071079_060--Hb_012640_010 Hb_071079_060--Hb_002659_110 Hb_144547_010 Hb_144547_010 Hb_047560_010--Hb_144547_010 Hb_005601_030 Hb_005601_030 Hb_047560_010--Hb_005601_030 Hb_047560_010--Hb_130739_010 Hb_001391_050 Hb_001391_050 Hb_047560_010--Hb_001391_050 Hb_000197_170 Hb_000197_170 Hb_047560_010--Hb_000197_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.351974 0.708032 0.497157 1.40045 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis