Hb_020805_160

Information

Type -
Description -
Location Contig20805: 123595-123876
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020805_160 0.0 - - -
2 Hb_143933_010 0.1396008979 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
3 Hb_130739_010 0.1442556277 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
4 Hb_071079_060 0.1472194623 - - PREDICTED: uncharacterized protein LOC105113464 [Populus euphratica]
5 Hb_119600_020 0.1527278695 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
6 Hb_005001_010 0.1667287879 - - GAST1 protein precursor, putative [Ricinus communis]
7 Hb_009851_040 0.1696180004 - - conserved hypothetical protein [Ricinus communis]
8 Hb_158349_010 0.1855736827 - - plastid CUL1 [Hevea brasiliensis]
9 Hb_007545_200 0.196006521 - - Pectinesterase-3 precursor, putative [Ricinus communis]
10 Hb_000343_170 0.1990931217 - - PREDICTED: probable sulfate transporter 3.4 [Jatropha curcas]
11 Hb_002965_180 0.2049589228 - - AMSH-like ubiquitin thioesterase 3 [Morus notabilis]
12 Hb_076233_010 0.2050297315 - - conserved hypothetical protein [Ricinus communis]
13 Hb_052802_010 0.2069128856 - - kinase, putative [Ricinus communis]
14 Hb_004204_040 0.2076696897 - - -
15 Hb_045786_010 0.2105842069 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
16 Hb_003906_030 0.2106659158 - - mads box protein, putative [Ricinus communis]
17 Hb_001810_050 0.2111980882 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001104_250 0.2147380664 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
19 Hb_000152_090 0.2171718325 - - unnamed protein product [Coffea canephora]
20 Hb_000172_150 0.2176888876 - - PREDICTED: protein UPSTREAM OF FLC [Populus euphratica]

Gene co-expression network

sample Hb_020805_160 Hb_020805_160 Hb_143933_010 Hb_143933_010 Hb_020805_160--Hb_143933_010 Hb_130739_010 Hb_130739_010 Hb_020805_160--Hb_130739_010 Hb_071079_060 Hb_071079_060 Hb_020805_160--Hb_071079_060 Hb_119600_020 Hb_119600_020 Hb_020805_160--Hb_119600_020 Hb_005001_010 Hb_005001_010 Hb_020805_160--Hb_005001_010 Hb_009851_040 Hb_009851_040 Hb_020805_160--Hb_009851_040 Hb_143933_010--Hb_130739_010 Hb_158349_010 Hb_158349_010 Hb_143933_010--Hb_158349_010 Hb_002965_180 Hb_002965_180 Hb_143933_010--Hb_002965_180 Hb_143933_010--Hb_071079_060 Hb_047560_010 Hb_047560_010 Hb_143933_010--Hb_047560_010 Hb_130739_010--Hb_071079_060 Hb_130739_010--Hb_002965_180 Hb_002659_110 Hb_002659_110 Hb_130739_010--Hb_002659_110 Hb_130739_010--Hb_158349_010 Hb_004204_040 Hb_004204_040 Hb_071079_060--Hb_004204_040 Hb_001810_050 Hb_001810_050 Hb_071079_060--Hb_001810_050 Hb_012640_010 Hb_012640_010 Hb_071079_060--Hb_012640_010 Hb_071079_060--Hb_002659_110 Hb_026620_010 Hb_026620_010 Hb_119600_020--Hb_026620_010 Hb_007545_200 Hb_007545_200 Hb_119600_020--Hb_007545_200 Hb_000172_150 Hb_000172_150 Hb_119600_020--Hb_000172_150 Hb_052802_010 Hb_052802_010 Hb_119600_020--Hb_052802_010 Hb_000270_530 Hb_000270_530 Hb_119600_020--Hb_000270_530 Hb_005001_010--Hb_009851_040 Hb_007951_090 Hb_007951_090 Hb_005001_010--Hb_007951_090 Hb_007125_020 Hb_007125_020 Hb_005001_010--Hb_007125_020 Hb_045786_010 Hb_045786_010 Hb_005001_010--Hb_045786_010 Hb_005001_010--Hb_071079_060 Hb_009851_040--Hb_045786_010 Hb_000628_100 Hb_000628_100 Hb_009851_040--Hb_000628_100 Hb_009851_040--Hb_000172_150 Hb_001502_010 Hb_001502_010 Hb_009851_040--Hb_001502_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.186926 0.538954 0.160057 1.25524 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis