Hb_119600_020

Information

Type transcription factor
Description TF Family: NAC
Location Contig119600: 23715-26064
Sequence    

Annotation

kegg
ID rcu:RCOM_1601970
description transcription factor, putative
nr
ID XP_002510719.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9S851
description Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thaliana GN=NAC031 PE=1 SV=1
trembl
ID B9R8S6
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1601970 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein cup-shaped cotyledon 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_119600_020 0.0 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
2 Hb_026620_010 0.1185964501 - - -
3 Hb_007545_200 0.1475996129 - - Pectinesterase-3 precursor, putative [Ricinus communis]
4 Hb_020805_160 0.1527278695 - - -
5 Hb_000172_150 0.1626745236 - - PREDICTED: protein UPSTREAM OF FLC [Populus euphratica]
6 Hb_052802_010 0.174721096 - - kinase, putative [Ricinus communis]
7 Hb_000270_530 0.1823783514 - - hypothetical protein POPTR_0015s08220g [Populus trichocarpa]
8 Hb_076233_010 0.1848401342 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007075_020 0.1884139376 transcription factor TF Family: TRAF ankyrin repeat family protein [Populus trichocarpa]
10 Hb_000174_020 0.1909526256 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
11 Hb_000343_170 0.1930497791 - - PREDICTED: probable sulfate transporter 3.4 [Jatropha curcas]
12 Hb_001808_010 0.1932497431 - - PREDICTED: dirigent protein 23-like [Jatropha curcas]
13 Hb_001810_050 0.1976267836 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004125_080 0.2046864642 - - PREDICTED: dCTP pyrophosphatase 1-like [Populus euphratica]
15 Hb_003012_010 0.2084774885 - - conserved hypothetical protein [Ricinus communis]
16 Hb_123887_010 0.208945116 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
17 Hb_009851_040 0.2099136668 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000373_110 0.2100917268 - - Nodulin, putative [Ricinus communis]
19 Hb_006890_050 0.2129056236 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Jatropha curcas]
20 Hb_014214_010 0.2129165115 - - PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_119600_020 Hb_119600_020 Hb_026620_010 Hb_026620_010 Hb_119600_020--Hb_026620_010 Hb_007545_200 Hb_007545_200 Hb_119600_020--Hb_007545_200 Hb_020805_160 Hb_020805_160 Hb_119600_020--Hb_020805_160 Hb_000172_150 Hb_000172_150 Hb_119600_020--Hb_000172_150 Hb_052802_010 Hb_052802_010 Hb_119600_020--Hb_052802_010 Hb_000270_530 Hb_000270_530 Hb_119600_020--Hb_000270_530 Hb_002053_070 Hb_002053_070 Hb_026620_010--Hb_002053_070 Hb_000976_090 Hb_000976_090 Hb_026620_010--Hb_000976_090 Hb_014214_010 Hb_014214_010 Hb_026620_010--Hb_014214_010 Hb_076233_010 Hb_076233_010 Hb_026620_010--Hb_076233_010 Hb_001808_010 Hb_001808_010 Hb_026620_010--Hb_001808_010 Hb_000343_170 Hb_000343_170 Hb_007545_200--Hb_000343_170 Hb_007545_200--Hb_052802_010 Hb_003906_030 Hb_003906_030 Hb_007545_200--Hb_003906_030 Hb_007545_200--Hb_020805_160 Hb_001810_050 Hb_001810_050 Hb_007545_200--Hb_001810_050 Hb_143933_010 Hb_143933_010 Hb_020805_160--Hb_143933_010 Hb_130739_010 Hb_130739_010 Hb_020805_160--Hb_130739_010 Hb_071079_060 Hb_071079_060 Hb_020805_160--Hb_071079_060 Hb_005001_010 Hb_005001_010 Hb_020805_160--Hb_005001_010 Hb_009851_040 Hb_009851_040 Hb_020805_160--Hb_009851_040 Hb_000860_030 Hb_000860_030 Hb_000172_150--Hb_000860_030 Hb_000172_150--Hb_000270_530 Hb_001255_030 Hb_001255_030 Hb_000172_150--Hb_001255_030 Hb_000378_030 Hb_000378_030 Hb_000172_150--Hb_000378_030 Hb_004757_040 Hb_004757_040 Hb_000172_150--Hb_004757_040 Hb_000705_070 Hb_000705_070 Hb_000172_150--Hb_000705_070 Hb_052802_010--Hb_001810_050 Hb_004204_040 Hb_004204_040 Hb_052802_010--Hb_004204_040 Hb_012640_010 Hb_012640_010 Hb_052802_010--Hb_012640_010 Hb_052802_010--Hb_071079_060 Hb_000604_050 Hb_000604_050 Hb_000270_530--Hb_000604_050 Hb_000702_040 Hb_000702_040 Hb_000270_530--Hb_000702_040 Hb_103149_010 Hb_103149_010 Hb_000270_530--Hb_103149_010 Hb_000567_220 Hb_000567_220 Hb_000270_530--Hb_000567_220 Hb_003529_010 Hb_003529_010 Hb_000270_530--Hb_003529_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0364976 0.158006 0.013627 0.336134 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0131433 0

CAGE analysis