Hb_000343_170

Information

Type -
Description -
Location Contig343: 139402-145203
Sequence    

Annotation

kegg
ID cit:102621812
description probable sulfate transporter 3.4-like
nr
ID XP_012073326.1
description PREDICTED: probable sulfate transporter 3.4 [Jatropha curcas]
swissprot
ID Q9LW86
description Probable sulfate transporter 3.4 OS=Arabidopsis thaliana GN=SULTR3;4 PE=2 SV=1
trembl
ID A0A067EJ27
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006183mg PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable sulfate transporter

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000343_170 0.0 - - PREDICTED: probable sulfate transporter 3.4 [Jatropha curcas]
2 Hb_007545_200 0.1463902288 - - Pectinesterase-3 precursor, putative [Ricinus communis]
3 Hb_012640_010 0.16186079 - - -
4 Hb_097783_010 0.163875623 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
5 Hb_001810_050 0.1668072653 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000172_260 0.1777716654 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]
7 Hb_045786_010 0.1801947567 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
8 Hb_000628_100 0.1821619896 - - hypothetical protein MTR_1g019660 [Medicago truncatula]
9 Hb_032280_010 0.1847958454 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
10 Hb_000164_250 0.1860314098 - - hypothetical protein CISIN_1g040645mg [Citrus sinensis]
11 Hb_015085_010 0.1868988259 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
12 Hb_023536_020 0.1886624079 - - Nicotianamine synthase, putative [Ricinus communis]
13 Hb_103931_010 0.1888843675 - - -
14 Hb_003777_100 0.1914922113 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
15 Hb_001053_100 0.1921692443 - - DNA-damage-inducible protein f, putative [Ricinus communis]
16 Hb_119600_020 0.1930497791 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
17 Hb_174644_010 0.1933679297 - - -
18 Hb_071079_060 0.1943056623 - - PREDICTED: uncharacterized protein LOC105113464 [Populus euphratica]
19 Hb_002411_070 0.1947552378 - - PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
20 Hb_003839_060 0.197266568 - - PREDICTED: BURP domain-containing protein 11-like [Gossypium raimondii]

Gene co-expression network

sample Hb_000343_170 Hb_000343_170 Hb_007545_200 Hb_007545_200 Hb_000343_170--Hb_007545_200 Hb_012640_010 Hb_012640_010 Hb_000343_170--Hb_012640_010 Hb_097783_010 Hb_097783_010 Hb_000343_170--Hb_097783_010 Hb_001810_050 Hb_001810_050 Hb_000343_170--Hb_001810_050 Hb_000172_260 Hb_000172_260 Hb_000343_170--Hb_000172_260 Hb_045786_010 Hb_045786_010 Hb_000343_170--Hb_045786_010 Hb_119600_020 Hb_119600_020 Hb_007545_200--Hb_119600_020 Hb_052802_010 Hb_052802_010 Hb_007545_200--Hb_052802_010 Hb_003906_030 Hb_003906_030 Hb_007545_200--Hb_003906_030 Hb_020805_160 Hb_020805_160 Hb_007545_200--Hb_020805_160 Hb_007545_200--Hb_001810_050 Hb_012640_010--Hb_001810_050 Hb_071079_060 Hb_071079_060 Hb_012640_010--Hb_071079_060 Hb_178343_010 Hb_178343_010 Hb_012640_010--Hb_178343_010 Hb_003906_040 Hb_003906_040 Hb_012640_010--Hb_003906_040 Hb_006052_080 Hb_006052_080 Hb_012640_010--Hb_006052_080 Hb_133648_010 Hb_133648_010 Hb_097783_010--Hb_133648_010 Hb_000085_120 Hb_000085_120 Hb_097783_010--Hb_000085_120 Hb_003641_010 Hb_003641_010 Hb_097783_010--Hb_003641_010 Hb_002820_130 Hb_002820_130 Hb_097783_010--Hb_002820_130 Hb_097783_010--Hb_007545_200 Hb_004204_040 Hb_004204_040 Hb_001810_050--Hb_004204_040 Hb_001810_050--Hb_052802_010 Hb_001810_050--Hb_071079_060 Hb_002894_020 Hb_002894_020 Hb_001810_050--Hb_002894_020 Hb_001810_050--Hb_006052_080 Hb_032280_010 Hb_032280_010 Hb_000172_260--Hb_032280_010 Hb_000164_250 Hb_000164_250 Hb_000172_260--Hb_000164_250 Hb_003777_100 Hb_003777_100 Hb_000172_260--Hb_003777_100 Hb_004148_030 Hb_004148_030 Hb_000172_260--Hb_004148_030 Hb_041067_010 Hb_041067_010 Hb_000172_260--Hb_041067_010 Hb_103931_010 Hb_103931_010 Hb_000172_260--Hb_103931_010 Hb_000579_210 Hb_000579_210 Hb_045786_010--Hb_000579_210 Hb_009851_040 Hb_009851_040 Hb_045786_010--Hb_009851_040 Hb_000628_060 Hb_000628_060 Hb_045786_010--Hb_000628_060 Hb_000628_100 Hb_000628_100 Hb_045786_010--Hb_000628_100 Hb_008196_010 Hb_008196_010 Hb_045786_010--Hb_008196_010 Hb_000270_790 Hb_000270_790 Hb_045786_010--Hb_000270_790
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.015719 0.0622025 0.00613381 0.258901 0 0.00687056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis