Hb_003906_030

Information

Type -
Description -
Location Contig3906: 17996-19137
Sequence    

Annotation

kegg
ID rcu:RCOM_1497850
description mads box protein, putative (EC:1.3.1.74)
nr
ID XP_002510866.1
description mads box protein, putative [Ricinus communis]
swissprot
ID O64645
description MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1
trembl
ID B9R9J1
description Mads box protein, putative OS=Ricinus communis GN=RCOM_1497850 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mads-box protein soc1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003906_030 0.0 - - mads box protein, putative [Ricinus communis]
2 Hb_000960_020 0.1280521743 - - -
3 Hb_091336_010 0.1724500151 - - -
4 Hb_007545_200 0.1955140837 - - Pectinesterase-3 precursor, putative [Ricinus communis]
5 Hb_003925_130 0.1955587491 - - glutathione s-transferase, putative [Ricinus communis]
6 Hb_000304_040 0.2007643985 - - PREDICTED: nicotianamine synthase-like [Jatropha curcas]
7 Hb_020805_160 0.2106659158 - - -
8 Hb_035761_010 0.2110497334 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
9 Hb_178711_010 0.212263096 - - hypothetical protein PHAVU_003G094000g [Phaseolus vulgaris]
10 Hb_001414_120 0.2162140932 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
11 Hb_000343_170 0.2252951809 - - PREDICTED: probable sulfate transporter 3.4 [Jatropha curcas]
12 Hb_008092_030 0.2344040474 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
13 Hb_002965_180 0.2351491674 - - AMSH-like ubiquitin thioesterase 3 [Morus notabilis]
14 Hb_004458_010 0.2361939324 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
15 Hb_119600_020 0.2365470824 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
16 Hb_158349_010 0.2392114499 - - plastid CUL1 [Hevea brasiliensis]
17 Hb_009102_020 0.246696582 - - hypothetical protein EUGRSUZ_I01262 [Eucalyptus grandis]
18 Hb_097783_010 0.249881933 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
19 Hb_048944_020 0.2515981606 - - hypothetical protein POPTR_0014s002002g, partial [Populus trichocarpa]
20 Hb_000769_050 0.2523555718 - - hypothetical protein CISIN_1g030637mg [Citrus sinensis]

Gene co-expression network

sample Hb_003906_030 Hb_003906_030 Hb_000960_020 Hb_000960_020 Hb_003906_030--Hb_000960_020 Hb_091336_010 Hb_091336_010 Hb_003906_030--Hb_091336_010 Hb_007545_200 Hb_007545_200 Hb_003906_030--Hb_007545_200 Hb_003925_130 Hb_003925_130 Hb_003906_030--Hb_003925_130 Hb_000304_040 Hb_000304_040 Hb_003906_030--Hb_000304_040 Hb_020805_160 Hb_020805_160 Hb_003906_030--Hb_020805_160 Hb_008092_030 Hb_008092_030 Hb_000960_020--Hb_008092_030 Hb_000960_020--Hb_091336_010 Hb_178711_010 Hb_178711_010 Hb_000960_020--Hb_178711_010 Hb_022534_010 Hb_022534_010 Hb_000960_020--Hb_022534_010 Hb_000960_020--Hb_000304_040 Hb_158349_010 Hb_158349_010 Hb_091336_010--Hb_158349_010 Hb_003602_080 Hb_003602_080 Hb_091336_010--Hb_003602_080 Hb_010012_020 Hb_010012_020 Hb_091336_010--Hb_010012_020 Hb_000668_170 Hb_000668_170 Hb_091336_010--Hb_000668_170 Hb_000203_090 Hb_000203_090 Hb_091336_010--Hb_000203_090 Hb_000343_170 Hb_000343_170 Hb_007545_200--Hb_000343_170 Hb_119600_020 Hb_119600_020 Hb_007545_200--Hb_119600_020 Hb_052802_010 Hb_052802_010 Hb_007545_200--Hb_052802_010 Hb_007545_200--Hb_020805_160 Hb_001810_050 Hb_001810_050 Hb_007545_200--Hb_001810_050 Hb_003925_130--Hb_000304_040 Hb_001414_120 Hb_001414_120 Hb_003925_130--Hb_001414_120 Hb_000769_050 Hb_000769_050 Hb_003925_130--Hb_000769_050 Hb_000925_020 Hb_000925_020 Hb_003925_130--Hb_000925_020 Hb_003925_130--Hb_178711_010 Hb_002548_010 Hb_002548_010 Hb_003925_130--Hb_002548_010 Hb_000304_040--Hb_001414_120 Hb_004458_010 Hb_004458_010 Hb_000304_040--Hb_004458_010 Hb_001957_050 Hb_001957_050 Hb_000304_040--Hb_001957_050 Hb_000304_040--Hb_000769_050 Hb_000373_110 Hb_000373_110 Hb_000304_040--Hb_000373_110 Hb_143933_010 Hb_143933_010 Hb_020805_160--Hb_143933_010 Hb_130739_010 Hb_130739_010 Hb_020805_160--Hb_130739_010 Hb_071079_060 Hb_071079_060 Hb_020805_160--Hb_071079_060 Hb_020805_160--Hb_119600_020 Hb_005001_010 Hb_005001_010 Hb_020805_160--Hb_005001_010 Hb_009851_040 Hb_009851_040 Hb_020805_160--Hb_009851_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.368991 1.85094 0.303509 2.90144 0 0.422136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis