Hb_005001_010

Information

Type -
Description -
Location Contig5001: 11984-12344
Sequence    

Annotation

kegg
ID rcu:RCOM_1588210
description GAST1 protein precursor, putative
nr
ID XP_002510126.1
description GAST1 protein precursor, putative [Ricinus communis]
swissprot
ID Q948Z4
description Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1
trembl
ID B9R733
description GAST1 protein, putative OS=Ricinus communis GN=RCOM_1588210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005001_010 0.0 - - GAST1 protein precursor, putative [Ricinus communis]
2 Hb_009851_040 0.108386697 - - conserved hypothetical protein [Ricinus communis]
3 Hb_020805_160 0.1667287879 - - -
4 Hb_007951_090 0.1860546737 - - hypothetical protein POPTR_0003s06080g [Populus trichocarpa]
5 Hb_007125_020 0.1877848188 - - hypothetical protein POPTR_0003s18010g [Populus trichocarpa]
6 Hb_045786_010 0.194842831 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
7 Hb_071079_060 0.1962822156 - - PREDICTED: uncharacterized protein LOC105113464 [Populus euphratica]
8 Hb_008196_010 0.1976051732 - - unnamed protein product [Coffea canephora]
9 Hb_158349_010 0.1996172694 - - plastid CUL1 [Hevea brasiliensis]
10 Hb_130739_010 0.1998824209 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
11 Hb_000321_010 0.2027040603 - - Chitinase 1 precursor, putative [Ricinus communis]
12 Hb_006615_110 0.2148870257 transcription factor TF Family: bZIP hypothetical protein JCGZ_11777 [Jatropha curcas]
13 Hb_143933_010 0.21654773 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
14 Hb_000152_090 0.2208657512 - - unnamed protein product [Coffea canephora]
15 Hb_101370_010 0.2229780814 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
16 Hb_001948_100 0.22526188 - - conserved hypothetical protein [Ricinus communis]
17 Hb_119600_020 0.2275467123 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
18 Hb_001104_250 0.2277719903 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
19 Hb_002783_210 0.2278687531 - - PREDICTED: uncharacterized protein LOC105635341 [Jatropha curcas]
20 Hb_002869_040 0.230194092 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_005001_010 Hb_005001_010 Hb_009851_040 Hb_009851_040 Hb_005001_010--Hb_009851_040 Hb_020805_160 Hb_020805_160 Hb_005001_010--Hb_020805_160 Hb_007951_090 Hb_007951_090 Hb_005001_010--Hb_007951_090 Hb_007125_020 Hb_007125_020 Hb_005001_010--Hb_007125_020 Hb_045786_010 Hb_045786_010 Hb_005001_010--Hb_045786_010 Hb_071079_060 Hb_071079_060 Hb_005001_010--Hb_071079_060 Hb_009851_040--Hb_045786_010 Hb_000628_100 Hb_000628_100 Hb_009851_040--Hb_000628_100 Hb_000172_150 Hb_000172_150 Hb_009851_040--Hb_000172_150 Hb_001502_010 Hb_001502_010 Hb_009851_040--Hb_001502_010 Hb_009851_040--Hb_020805_160 Hb_143933_010 Hb_143933_010 Hb_020805_160--Hb_143933_010 Hb_130739_010 Hb_130739_010 Hb_020805_160--Hb_130739_010 Hb_020805_160--Hb_071079_060 Hb_119600_020 Hb_119600_020 Hb_020805_160--Hb_119600_020 Hb_000321_010 Hb_000321_010 Hb_007951_090--Hb_000321_010 Hb_101370_010 Hb_101370_010 Hb_007951_090--Hb_101370_010 Hb_002783_210 Hb_002783_210 Hb_007951_090--Hb_002783_210 Hb_010810_040 Hb_010810_040 Hb_007951_090--Hb_010810_040 Hb_003529_010 Hb_003529_010 Hb_007951_090--Hb_003529_010 Hb_001489_040 Hb_001489_040 Hb_007951_090--Hb_001489_040 Hb_009838_030 Hb_009838_030 Hb_007125_020--Hb_009838_030 Hb_001948_100 Hb_001948_100 Hb_007125_020--Hb_001948_100 Hb_002014_120 Hb_002014_120 Hb_007125_020--Hb_002014_120 Hb_000352_020 Hb_000352_020 Hb_007125_020--Hb_000352_020 Hb_004652_040 Hb_004652_040 Hb_007125_020--Hb_004652_040 Hb_003337_010 Hb_003337_010 Hb_007125_020--Hb_003337_010 Hb_000579_210 Hb_000579_210 Hb_045786_010--Hb_000579_210 Hb_000628_060 Hb_000628_060 Hb_045786_010--Hb_000628_060 Hb_045786_010--Hb_000628_100 Hb_008196_010 Hb_008196_010 Hb_045786_010--Hb_008196_010 Hb_000270_790 Hb_000270_790 Hb_045786_010--Hb_000270_790 Hb_071079_060--Hb_130739_010 Hb_004204_040 Hb_004204_040 Hb_071079_060--Hb_004204_040 Hb_001810_050 Hb_001810_050 Hb_071079_060--Hb_001810_050 Hb_012640_010 Hb_012640_010 Hb_071079_060--Hb_012640_010 Hb_002659_110 Hb_002659_110 Hb_071079_060--Hb_002659_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.221277 1.08727 0.415717 2.6912 0.211579 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis