Hb_000321_010

Information

Type -
Description -
Location Contig321: 13279-14199
Sequence    

Annotation

kegg
ID rcu:RCOM_1264000
description Chitinase 1 precursor, putative (EC:3.2.1.14)
nr
ID XP_002532811.1
description Chitinase 1 precursor, putative [Ricinus communis]
swissprot
ID Q7M443
description Chitinase 2 OS=Tulipa bakeri PE=1 SV=1
trembl
ID B9T3J2
description Chitinase 1, putative OS=Ricinus communis GN=RCOM_1264000 PE=3 SV=1
Gene Ontology
ID GO:0004568
description chitinase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33936: 13296-13990
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000321_010 0.0 - - Chitinase 1 precursor, putative [Ricinus communis]
2 Hb_010810_040 0.1021408679 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
3 Hb_007951_090 0.1513308447 - - hypothetical protein POPTR_0003s06080g [Populus trichocarpa]
4 Hb_010012_020 0.1692424415 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002420_030 0.1712963538 - - Disease resistance protein RPS5, putative [Ricinus communis]
6 Hb_009620_010 0.1734827785 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
7 Hb_001489_040 0.1792364522 - - PREDICTED: galactose oxidase [Jatropha curcas]
8 Hb_003674_010 0.1820807869 - - purine transporter, putative [Ricinus communis]
9 Hb_001957_050 0.1878119719 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
10 Hb_091336_010 0.1924999155 - - -
11 Hb_002869_040 0.1989678803 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
12 Hb_039410_010 0.2012179944 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
13 Hb_005001_010 0.2027040603 - - GAST1 protein precursor, putative [Ricinus communis]
14 Hb_000203_090 0.2062539617 - - hypothetical protein POPTR_0013s04080g [Populus trichocarpa]
15 Hb_003602_080 0.2127989404 - - hypothetical protein POPTR_0002s10890g [Populus trichocarpa]
16 Hb_000167_090 0.2162353946 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005183_010 0.2173740429 - - PREDICTED: probable calcium-binding protein CML17 [Malus domestica]
18 Hb_000769_030 0.2177518337 - - ankyrin repeat-containing protein, putative [Ricinus communis]
19 Hb_011429_010 0.2194158735 - - hypothetical protein POPTR_0188s00230g [Populus trichocarpa]
20 Hb_165552_020 0.2207859924 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]

Gene co-expression network

sample Hb_000321_010 Hb_000321_010 Hb_010810_040 Hb_010810_040 Hb_000321_010--Hb_010810_040 Hb_007951_090 Hb_007951_090 Hb_000321_010--Hb_007951_090 Hb_010012_020 Hb_010012_020 Hb_000321_010--Hb_010012_020 Hb_002420_030 Hb_002420_030 Hb_000321_010--Hb_002420_030 Hb_009620_010 Hb_009620_010 Hb_000321_010--Hb_009620_010 Hb_001489_040 Hb_001489_040 Hb_000321_010--Hb_001489_040 Hb_010810_040--Hb_007951_090 Hb_010810_040--Hb_001489_040 Hb_010810_040--Hb_009620_010 Hb_010810_040--Hb_002420_030 Hb_002869_040 Hb_002869_040 Hb_010810_040--Hb_002869_040 Hb_101370_010 Hb_101370_010 Hb_007951_090--Hb_101370_010 Hb_002783_210 Hb_002783_210 Hb_007951_090--Hb_002783_210 Hb_003529_010 Hb_003529_010 Hb_007951_090--Hb_003529_010 Hb_007951_090--Hb_001489_040 Hb_003674_010 Hb_003674_010 Hb_010012_020--Hb_003674_010 Hb_003602_080 Hb_003602_080 Hb_010012_020--Hb_003602_080 Hb_010012_020--Hb_002420_030 Hb_010573_030 Hb_010573_030 Hb_010012_020--Hb_010573_030 Hb_165552_020 Hb_165552_020 Hb_010012_020--Hb_165552_020 Hb_011429_010 Hb_011429_010 Hb_010012_020--Hb_011429_010 Hb_002420_030--Hb_165552_020 Hb_005040_010 Hb_005040_010 Hb_002420_030--Hb_005040_010 Hb_001957_050 Hb_001957_050 Hb_002420_030--Hb_001957_050 Hb_002420_030--Hb_003674_010 Hb_039410_010 Hb_039410_010 Hb_002420_030--Hb_039410_010 Hb_009620_010--Hb_002420_030 Hb_009620_010--Hb_001957_050 Hb_043115_010 Hb_043115_010 Hb_009620_010--Hb_043115_010 Hb_009620_010--Hb_039410_010 Hb_002422_010 Hb_002422_010 Hb_009620_010--Hb_002422_010 Hb_009620_010--Hb_010012_020 Hb_001489_040--Hb_003674_010 Hb_000028_360 Hb_000028_360 Hb_001489_040--Hb_000028_360 Hb_006916_220 Hb_006916_220 Hb_001489_040--Hb_006916_220 Hb_002049_030 Hb_002049_030 Hb_001489_040--Hb_002049_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.459618 14.6566 2.83567 13.8573 2.14716 0.0278804
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis