Hb_010810_040

Information

Type -
Description -
Location Contig10810: 15477-20913
Sequence    

Annotation

kegg
ID tcc:TCM_003164
description hypothetical protein
nr
ID XP_012072612.1
description PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010810_040 0.0 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
2 Hb_000321_010 0.1021408679 - - Chitinase 1 precursor, putative [Ricinus communis]
3 Hb_007951_090 0.1810849979 - - hypothetical protein POPTR_0003s06080g [Populus trichocarpa]
4 Hb_001489_040 0.1871973015 - - PREDICTED: galactose oxidase [Jatropha curcas]
5 Hb_009620_010 0.1880787177 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
6 Hb_002420_030 0.1938278165 - - Disease resistance protein RPS5, putative [Ricinus communis]
7 Hb_002869_040 0.1978145869 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
8 Hb_001957_050 0.2052962271 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
9 Hb_003674_010 0.2127883953 - - purine transporter, putative [Ricinus communis]
10 Hb_002984_020 0.2203104106 - - hypothetical protein EUGRSUZ_J02661 [Eucalyptus grandis]
11 Hb_001147_090 0.2206702415 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
12 Hb_010012_020 0.2222950431 - - conserved hypothetical protein [Ricinus communis]
13 Hb_039410_010 0.2251860587 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
14 Hb_000203_090 0.2303560185 - - hypothetical protein POPTR_0013s04080g [Populus trichocarpa]
15 Hb_000167_090 0.2331536282 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003012_010 0.2392937853 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005001_010 0.2401341485 - - GAST1 protein precursor, putative [Ricinus communis]
18 Hb_000008_040 0.2449697646 - - hypothetical protein POPTR_0009s01550g [Populus trichocarpa]
19 Hb_002548_010 0.2461035001 - - hypothetical protein EUGRSUZ_L00530 [Eucalyptus grandis]
20 Hb_003602_080 0.2465369203 - - hypothetical protein POPTR_0002s10890g [Populus trichocarpa]

Gene co-expression network

sample Hb_010810_040 Hb_010810_040 Hb_000321_010 Hb_000321_010 Hb_010810_040--Hb_000321_010 Hb_007951_090 Hb_007951_090 Hb_010810_040--Hb_007951_090 Hb_001489_040 Hb_001489_040 Hb_010810_040--Hb_001489_040 Hb_009620_010 Hb_009620_010 Hb_010810_040--Hb_009620_010 Hb_002420_030 Hb_002420_030 Hb_010810_040--Hb_002420_030 Hb_002869_040 Hb_002869_040 Hb_010810_040--Hb_002869_040 Hb_000321_010--Hb_007951_090 Hb_010012_020 Hb_010012_020 Hb_000321_010--Hb_010012_020 Hb_000321_010--Hb_002420_030 Hb_000321_010--Hb_009620_010 Hb_000321_010--Hb_001489_040 Hb_101370_010 Hb_101370_010 Hb_007951_090--Hb_101370_010 Hb_002783_210 Hb_002783_210 Hb_007951_090--Hb_002783_210 Hb_003529_010 Hb_003529_010 Hb_007951_090--Hb_003529_010 Hb_007951_090--Hb_001489_040 Hb_003674_010 Hb_003674_010 Hb_001489_040--Hb_003674_010 Hb_000028_360 Hb_000028_360 Hb_001489_040--Hb_000028_360 Hb_006916_220 Hb_006916_220 Hb_001489_040--Hb_006916_220 Hb_002049_030 Hb_002049_030 Hb_001489_040--Hb_002049_030 Hb_009620_010--Hb_002420_030 Hb_001957_050 Hb_001957_050 Hb_009620_010--Hb_001957_050 Hb_043115_010 Hb_043115_010 Hb_009620_010--Hb_043115_010 Hb_039410_010 Hb_039410_010 Hb_009620_010--Hb_039410_010 Hb_002422_010 Hb_002422_010 Hb_009620_010--Hb_002422_010 Hb_009620_010--Hb_010012_020 Hb_165552_020 Hb_165552_020 Hb_002420_030--Hb_165552_020 Hb_002420_030--Hb_010012_020 Hb_005040_010 Hb_005040_010 Hb_002420_030--Hb_005040_010 Hb_002420_030--Hb_001957_050 Hb_002420_030--Hb_003674_010 Hb_002420_030--Hb_039410_010 Hb_002869_040--Hb_001957_050 Hb_000167_090 Hb_000167_090 Hb_002869_040--Hb_000167_090 Hb_003012_010 Hb_003012_010 Hb_002869_040--Hb_003012_010 Hb_002548_010 Hb_002548_010 Hb_002869_040--Hb_002548_010 Hb_006590_030 Hb_006590_030 Hb_002869_040--Hb_006590_030 Hb_000373_110 Hb_000373_110 Hb_002869_040--Hb_000373_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.117465 0.0211036 0.121479 0.0281661 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis