Hb_000925_020

Information

Type -
Description -
Location Contig925: 5264-6160
Sequence    

Annotation

kegg
ID rcu:RCOM_0437620
description hypothetical protein
nr
ID XP_012074425.1
description PREDICTED: protein YLS9 [Jatropha curcas]
swissprot
ID Q9SJ52
description Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1
trembl
ID B9T2S3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0437620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000925_020 0.0 - - PREDICTED: protein YLS9 [Jatropha curcas]
2 Hb_158110_010 0.1156047199 - - hypothetical protein CICLE_v10012017mg [Citrus clementina]
3 Hb_104855_010 0.1238508041 - - -
4 Hb_182625_010 0.1274819884 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
5 Hb_014361_140 0.1279500986 - - PREDICTED: peroxidase 51 [Jatropha curcas]
6 Hb_011671_360 0.1283746319 - - Hyoscyamine 6-dioxygenase, putative [Ricinus communis]
7 Hb_000061_060 0.1326150401 transcription factor TF Family: MYB-related transcription factor MYB28 [Arabidopsis thaliana]
8 Hb_137349_010 0.136793784 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
9 Hb_128460_020 0.1383631496 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
10 Hb_048937_010 0.1400885001 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1 [Nelumbo nucifera]
11 Hb_000072_010 0.1450392998 - - hypothetical protein B456_006G246700 [Gossypium raimondii]
12 Hb_005773_010 0.1488199792 - - -
13 Hb_000203_090 0.1498476406 - - hypothetical protein POPTR_0013s04080g [Populus trichocarpa]
14 Hb_053935_010 0.1503650261 - - hypothetical protein EUGRSUZ_G02294 [Eucalyptus grandis]
15 Hb_001115_100 0.1548025691 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
16 Hb_010369_010 0.1550586696 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004241_190 0.1553957905 - - -
18 Hb_003925_130 0.1554629189 - - glutathione s-transferase, putative [Ricinus communis]
19 Hb_000769_030 0.1596560739 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_001054_110 0.1598449624 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]

Gene co-expression network

sample Hb_000925_020 Hb_000925_020 Hb_158110_010 Hb_158110_010 Hb_000925_020--Hb_158110_010 Hb_104855_010 Hb_104855_010 Hb_000925_020--Hb_104855_010 Hb_182625_010 Hb_182625_010 Hb_000925_020--Hb_182625_010 Hb_014361_140 Hb_014361_140 Hb_000925_020--Hb_014361_140 Hb_011671_360 Hb_011671_360 Hb_000925_020--Hb_011671_360 Hb_000061_060 Hb_000061_060 Hb_000925_020--Hb_000061_060 Hb_128460_020 Hb_128460_020 Hb_158110_010--Hb_128460_020 Hb_158110_010--Hb_014361_140 Hb_158110_010--Hb_000061_060 Hb_053935_010 Hb_053935_010 Hb_158110_010--Hb_053935_010 Hb_004241_190 Hb_004241_190 Hb_158110_010--Hb_004241_190 Hb_000373_220 Hb_000373_220 Hb_158110_010--Hb_000373_220 Hb_104855_010--Hb_011671_360 Hb_000072_010 Hb_000072_010 Hb_104855_010--Hb_000072_010 Hb_005773_010 Hb_005773_010 Hb_104855_010--Hb_005773_010 Hb_104855_010--Hb_000061_060 Hb_104855_010--Hb_182625_010 Hb_104855_010--Hb_014361_140 Hb_182625_010--Hb_011671_360 Hb_000203_090 Hb_000203_090 Hb_182625_010--Hb_000203_090 Hb_182625_010--Hb_014361_140 Hb_003073_060 Hb_003073_060 Hb_182625_010--Hb_003073_060 Hb_000152_090 Hb_000152_090 Hb_182625_010--Hb_000152_090 Hb_014361_140--Hb_128460_020 Hb_014361_140--Hb_000061_060 Hb_014361_140--Hb_053935_010 Hb_014361_140--Hb_004241_190 Hb_011671_360--Hb_000072_010 Hb_011671_360--Hb_003073_060 Hb_005428_010 Hb_005428_010 Hb_011671_360--Hb_005428_010 Hb_011671_360--Hb_005773_010 Hb_000061_060--Hb_128460_020 Hb_000061_060--Hb_053935_010 Hb_000061_060--Hb_004241_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.560236 0.298569 0.790932 0 0.0291236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0184377 0

CAGE analysis