Hb_052802_010

Information

Type -
Description -
Location Contig52802: 1-330
Sequence    

Annotation

kegg
ID rcu:RCOM_0231810
description kinase, putative (EC:2.7.10.1)
nr
ID XP_002527242.1
description kinase, putative [Ricinus communis]
swissprot
ID Q9LXA5
description L-type lectin-domain containing receptor kinase IX.1 OS=Arabidopsis thaliana GN=LECRK91 PE=2 SV=1
trembl
ID B9SMM3
description Kinase, putative OS=Ricinus communis GN=RCOM_0231810 PE=3 SV=1
Gene Ontology
ID GO:0004674
description l-type lectin-domain containing receptor kinase -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052802_010 0.0 - - kinase, putative [Ricinus communis]
2 Hb_001810_050 0.1203225726 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004204_040 0.1464004911 - - -
4 Hb_007545_200 0.1603031424 - - Pectinesterase-3 precursor, putative [Ricinus communis]
5 Hb_012640_010 0.1679897216 - - -
6 Hb_119600_020 0.174721096 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
7 Hb_071079_060 0.1837165209 - - PREDICTED: uncharacterized protein LOC105113464 [Populus euphratica]
8 Hb_000172_150 0.1925074345 - - PREDICTED: protein UPSTREAM OF FLC [Populus euphratica]
9 Hb_116360_010 0.2017967618 - - -
10 Hb_000343_170 0.2043280612 - - PREDICTED: probable sulfate transporter 3.4 [Jatropha curcas]
11 Hb_020805_160 0.2069128856 - - -
12 Hb_002659_110 0.2081265707 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
13 Hb_000320_250 0.2175986418 - - hypothetical protein POPTR_0021s00440g [Populus trichocarpa]
14 Hb_000174_020 0.2301619714 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
15 Hb_000445_480 0.2351277657 - - cytochrome P450, putative [Ricinus communis]
16 Hb_002511_050 0.2368618254 - - ATP binding protein, putative [Ricinus communis]
17 Hb_156850_040 0.2380056437 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
18 Hb_003582_010 0.2381131108 - - hypothetical protein EUGRSUZ_B026451, partial [Eucalyptus grandis]
19 Hb_001946_370 0.2387065105 - - conserved hypothetical protein [Ricinus communis]
20 Hb_045786_010 0.2402032301 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]

Gene co-expression network

sample Hb_052802_010 Hb_052802_010 Hb_001810_050 Hb_001810_050 Hb_052802_010--Hb_001810_050 Hb_004204_040 Hb_004204_040 Hb_052802_010--Hb_004204_040 Hb_007545_200 Hb_007545_200 Hb_052802_010--Hb_007545_200 Hb_012640_010 Hb_012640_010 Hb_052802_010--Hb_012640_010 Hb_119600_020 Hb_119600_020 Hb_052802_010--Hb_119600_020 Hb_071079_060 Hb_071079_060 Hb_052802_010--Hb_071079_060 Hb_001810_050--Hb_004204_040 Hb_001810_050--Hb_012640_010 Hb_001810_050--Hb_071079_060 Hb_002894_020 Hb_002894_020 Hb_001810_050--Hb_002894_020 Hb_006052_080 Hb_006052_080 Hb_001810_050--Hb_006052_080 Hb_002659_110 Hb_002659_110 Hb_004204_040--Hb_002659_110 Hb_004204_040--Hb_071079_060 Hb_010926_020 Hb_010926_020 Hb_004204_040--Hb_010926_020 Hb_057018_010 Hb_057018_010 Hb_004204_040--Hb_057018_010 Hb_000343_170 Hb_000343_170 Hb_007545_200--Hb_000343_170 Hb_007545_200--Hb_119600_020 Hb_003906_030 Hb_003906_030 Hb_007545_200--Hb_003906_030 Hb_020805_160 Hb_020805_160 Hb_007545_200--Hb_020805_160 Hb_007545_200--Hb_001810_050 Hb_012640_010--Hb_071079_060 Hb_178343_010 Hb_178343_010 Hb_012640_010--Hb_178343_010 Hb_012640_010--Hb_000343_170 Hb_003906_040 Hb_003906_040 Hb_012640_010--Hb_003906_040 Hb_012640_010--Hb_006052_080 Hb_026620_010 Hb_026620_010 Hb_119600_020--Hb_026620_010 Hb_119600_020--Hb_020805_160 Hb_000172_150 Hb_000172_150 Hb_119600_020--Hb_000172_150 Hb_000270_530 Hb_000270_530 Hb_119600_020--Hb_000270_530 Hb_130739_010 Hb_130739_010 Hb_071079_060--Hb_130739_010 Hb_071079_060--Hb_020805_160 Hb_071079_060--Hb_002659_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.292443 0.365186 0.110608 2.08377 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.106082 0

CAGE analysis