Hb_000427_080

Information

Type -
Description -
Location Contig427: 147697-149022
Sequence    

Annotation

kegg
ID gmx:102663276
description uncharacterized LOC102663276
nr
ID XP_012453555.1
description PREDICTED: uncharacterized protein LOC105775598 [Gossypium raimondii]
swissprot
ID P92522
description Uncharacterized mitochondrial protein AtMg00850 OS=Arabidopsis thaliana GN=AtMg00850 PE=4 SV=1
trembl
ID A0A0A9UVR7
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID GO:0043170
description retrotransposon unclassified

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000427_080 0.0 - - PREDICTED: uncharacterized protein LOC105775598 [Gossypium raimondii]
2 Hb_095853_010 0.2510967451 - - -
3 Hb_001461_020 0.2700144304 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
4 Hb_000003_260 0.2859850727 - - -
5 Hb_006054_050 0.3199690075 - - PREDICTED: uncharacterized protein LOC105649250, partial [Jatropha curcas]
6 Hb_137276_010 0.3214115612 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
7 Hb_000062_110 0.3293950951 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
8 Hb_000189_200 0.3304741148 - - hypothetical protein JCGZ_02242 [Jatropha curcas]
9 Hb_005962_010 0.3357769232 - - -
10 Hb_023675_030 0.3384100888 - - -
11 Hb_005529_030 0.3409826144 - - PREDICTED: cytochrome P450 94A1-like [Populus euphratica]
12 Hb_001488_260 0.3441439878 - - Alpha-2-macroglobulin [Gossypium arboreum]
13 Hb_031658_040 0.3445482897 - - -
14 Hb_000078_170 0.3461174262 - - -
15 Hb_000703_300 0.3464303854 - - -
16 Hb_000840_170 0.3482342404 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
17 Hb_001366_160 0.3488592585 - - -
18 Hb_012146_030 0.3499351174 - - -
19 Hb_001766_040 0.3522406499 - - chaperone clpb, putative [Ricinus communis]
20 Hb_176368_010 0.352908951 - - hypothetical protein POPTR_0019s00300g [Populus trichocarpa]

Gene co-expression network

sample Hb_000427_080 Hb_000427_080 Hb_095853_010 Hb_095853_010 Hb_000427_080--Hb_095853_010 Hb_001461_020 Hb_001461_020 Hb_000427_080--Hb_001461_020 Hb_000003_260 Hb_000003_260 Hb_000427_080--Hb_000003_260 Hb_006054_050 Hb_006054_050 Hb_000427_080--Hb_006054_050 Hb_137276_010 Hb_137276_010 Hb_000427_080--Hb_137276_010 Hb_000062_110 Hb_000062_110 Hb_000427_080--Hb_000062_110 Hb_171108_010 Hb_171108_010 Hb_095853_010--Hb_171108_010 Hb_012404_030 Hb_012404_030 Hb_095853_010--Hb_012404_030 Hb_008727_070 Hb_008727_070 Hb_095853_010--Hb_008727_070 Hb_004899_280 Hb_004899_280 Hb_095853_010--Hb_004899_280 Hb_006634_020 Hb_006634_020 Hb_095853_010--Hb_006634_020 Hb_023675_030 Hb_023675_030 Hb_001461_020--Hb_023675_030 Hb_001461_020--Hb_000003_260 Hb_085083_020 Hb_085083_020 Hb_001461_020--Hb_085083_020 Hb_000236_450 Hb_000236_450 Hb_001461_020--Hb_000236_450 Hb_001417_020 Hb_001417_020 Hb_001461_020--Hb_001417_020 Hb_000964_070 Hb_000964_070 Hb_001461_020--Hb_000964_070 Hb_000086_040 Hb_000086_040 Hb_000003_260--Hb_000086_040 Hb_000329_050 Hb_000329_050 Hb_000003_260--Hb_000329_050 Hb_000116_300 Hb_000116_300 Hb_000003_260--Hb_000116_300 Hb_018202_030 Hb_018202_030 Hb_000003_260--Hb_018202_030 Hb_012146_030 Hb_012146_030 Hb_006054_050--Hb_012146_030 Hb_015026_080 Hb_015026_080 Hb_006054_050--Hb_015026_080 Hb_000753_200 Hb_000753_200 Hb_006054_050--Hb_000753_200 Hb_006788_160 Hb_006788_160 Hb_006054_050--Hb_006788_160 Hb_035755_010 Hb_035755_010 Hb_006054_050--Hb_035755_010 Hb_000130_260 Hb_000130_260 Hb_006054_050--Hb_000130_260 Hb_007313_100 Hb_007313_100 Hb_137276_010--Hb_007313_100 Hb_011931_060 Hb_011931_060 Hb_137276_010--Hb_011931_060 Hb_004545_170 Hb_004545_170 Hb_137276_010--Hb_004545_170 Hb_003058_020 Hb_003058_020 Hb_137276_010--Hb_003058_020 Hb_022250_100 Hb_022250_100 Hb_137276_010--Hb_022250_100 Hb_002092_110 Hb_002092_110 Hb_137276_010--Hb_002092_110 Hb_001766_040 Hb_001766_040 Hb_000062_110--Hb_001766_040 Hb_000941_140 Hb_000941_140 Hb_000062_110--Hb_000941_140 Hb_006618_040 Hb_006618_040 Hb_000062_110--Hb_006618_040 Hb_001369_370 Hb_001369_370 Hb_000062_110--Hb_001369_370 Hb_011344_020 Hb_011344_020 Hb_000062_110--Hb_011344_020 Hb_019516_030 Hb_019516_030 Hb_000062_110--Hb_019516_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.768139 0.243979 0.0601928 0.0718663 0.755547 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.216254 0.0567068 0 0.136061 0.825809

CAGE analysis