Hb_000086_040

Information

Type -
Description -
Location Contig86: 20282-22195
Sequence    

Annotation

kegg
ID rcu:RCOM_0488320
description legumin B precursor, putative
nr
ID XP_012085316.1
description PREDICTED: legumin A-like [Jatropha curcas]
swissprot
ID P09802
description Legumin A OS=Gossypium hirsutum GN=LEGA PE=2 SV=2
trembl
ID A0A067K2P3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17688 PE=4 SV=1
Gene Ontology
ID GO:0045735
description legumin a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60689: 20496-22107
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_040 0.0 - - PREDICTED: legumin A-like [Jatropha curcas]
2 Hb_000003_260 0.2115316859 - - -
3 Hb_018202_030 0.2706068334 - - PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]
4 Hb_004117_350 0.2805428788 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP4 [Jatropha curcas]
5 Hb_185447_010 0.2970159425 - - hypothetical protein JCGZ_13512 [Jatropha curcas]
6 Hb_003435_010 0.299444226 - - PREDICTED: ras-related protein RABC2a-like [Jatropha curcas]
7 Hb_003780_070 0.3003936011 - - PREDICTED: pirin-like protein [Jatropha curcas]
8 Hb_122556_010 0.3047046765 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
9 Hb_000313_210 0.3056117591 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002820_010 0.3094823251 - - PREDICTED: general transcription factor IIH subunit 3 isoform X2 [Jatropha curcas]
11 Hb_003018_140 0.3107099958 - - PREDICTED: endoglucanase 24-like [Jatropha curcas]
12 Hb_015057_060 0.316374361 - - -
13 Hb_003333_010 0.3173921069 - - PREDICTED: uncharacterized protein LOC105645175 [Jatropha curcas]
14 Hb_159036_010 0.3184134226 - - -
15 Hb_012146_030 0.3185645848 - - -
16 Hb_001461_020 0.3187597235 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
17 Hb_114310_110 0.3200144112 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
18 Hb_001160_130 0.3207552124 - - Glycolipid transfer protein, putative [Ricinus communis]
19 Hb_000208_120 0.32122991 - - PREDICTED: CAP-Gly domain-containing linker protein 1-like [Jatropha curcas]
20 Hb_005237_050 0.3218280515 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105630924 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_040 Hb_000086_040 Hb_000003_260 Hb_000003_260 Hb_000086_040--Hb_000003_260 Hb_018202_030 Hb_018202_030 Hb_000086_040--Hb_018202_030 Hb_004117_350 Hb_004117_350 Hb_000086_040--Hb_004117_350 Hb_185447_010 Hb_185447_010 Hb_000086_040--Hb_185447_010 Hb_003435_010 Hb_003435_010 Hb_000086_040--Hb_003435_010 Hb_003780_070 Hb_003780_070 Hb_000086_040--Hb_003780_070 Hb_001461_020 Hb_001461_020 Hb_000003_260--Hb_001461_020 Hb_000329_050 Hb_000329_050 Hb_000003_260--Hb_000329_050 Hb_000427_080 Hb_000427_080 Hb_000003_260--Hb_000427_080 Hb_000116_300 Hb_000116_300 Hb_000003_260--Hb_000116_300 Hb_000003_260--Hb_018202_030 Hb_012146_030 Hb_012146_030 Hb_018202_030--Hb_012146_030 Hb_006649_070 Hb_006649_070 Hb_018202_030--Hb_006649_070 Hb_044187_010 Hb_044187_010 Hb_018202_030--Hb_044187_010 Hb_006054_050 Hb_006054_050 Hb_018202_030--Hb_006054_050 Hb_164804_010 Hb_164804_010 Hb_018202_030--Hb_164804_010 Hb_101832_010 Hb_101832_010 Hb_018202_030--Hb_101832_010 Hb_183086_050 Hb_183086_050 Hb_004117_350--Hb_183086_050 Hb_004117_350--Hb_012146_030 Hb_001579_240 Hb_001579_240 Hb_004117_350--Hb_001579_240 Hb_114310_110 Hb_114310_110 Hb_004117_350--Hb_114310_110 Hb_004117_350--Hb_003780_070 Hb_004117_350--Hb_006649_070 Hb_000208_120 Hb_000208_120 Hb_185447_010--Hb_000208_120 Hb_003976_020 Hb_003976_020 Hb_185447_010--Hb_003976_020 Hb_185447_010--Hb_114310_110 Hb_018133_090 Hb_018133_090 Hb_185447_010--Hb_018133_090 Hb_001439_060 Hb_001439_060 Hb_185447_010--Hb_001439_060 Hb_000608_170 Hb_000608_170 Hb_185447_010--Hb_000608_170 Hb_000009_660 Hb_000009_660 Hb_003435_010--Hb_000009_660 Hb_000116_360 Hb_000116_360 Hb_003435_010--Hb_000116_360 Hb_000120_290 Hb_000120_290 Hb_003435_010--Hb_000120_290 Hb_002447_080 Hb_002447_080 Hb_003435_010--Hb_002447_080 Hb_003435_010--Hb_183086_050 Hb_001976_040 Hb_001976_040 Hb_003435_010--Hb_001976_040 Hb_011316_090 Hb_011316_090 Hb_003780_070--Hb_011316_090 Hb_002276_020 Hb_002276_020 Hb_003780_070--Hb_002276_020 Hb_000631_080 Hb_000631_080 Hb_003780_070--Hb_000631_080 Hb_002024_010 Hb_002024_010 Hb_003780_070--Hb_002024_010 Hb_015198_020 Hb_015198_020 Hb_003780_070--Hb_015198_020 Hb_000335_030 Hb_000335_030 Hb_003780_070--Hb_000335_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.331144 0.0337347 0.0106637 0.0299071 0.0526645 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0928321 0.0973784 0.18301 0.029149 0.254736

CAGE analysis