Hb_164804_010

Information

Type -
Description -
Location Contig164804: 2-1811
Sequence    

Annotation

kegg
ID rcu:RCOM_1076830
description chromatin assembly factor 1, subunit A, putative
nr
ID BAJ53153.1
description JHL23J11.8 [Jatropha curcas]
swissprot
ID Q9SXY0
description Chromatin assembly factor 1 subunit FAS1 OS=Arabidopsis thaliana GN=FAS1 PE=1 SV=1
trembl
ID E6NU43
description JHL23J11.8 protein OS=Jatropha curcas GN=JHL23J11.8 PE=4 SV=1
Gene Ontology
ID GO:0006259
description partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_164804_010 0.0 - - JHL23J11.8 [Jatropha curcas]
2 Hb_006198_110 0.0981255338 - - PREDICTED: uncharacterized protein At4g13200, chloroplastic [Jatropha curcas]
3 Hb_002942_190 0.1024783145 - - poly(A) polymerase, putative [Ricinus communis]
4 Hb_002963_020 0.1075545669 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005539_360 0.1077761437 - - kinesin light chain, putative [Ricinus communis]
6 Hb_000111_360 0.1086174497 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004657_050 0.1140655886 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
8 Hb_003185_080 0.1155556432 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
9 Hb_001322_190 0.1164978614 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
10 Hb_000227_120 0.1166133446 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000754_040 0.1170935515 - - PREDICTED: uncharacterized protein LOC105115746 [Populus euphratica]
12 Hb_000107_620 0.1178463613 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
13 Hb_003142_020 0.1195236273 - - PREDICTED: uncharacterized protein LOC105648334 [Jatropha curcas]
14 Hb_004751_020 0.1226798663 - - PREDICTED: uncharacterized protein LOC105648266 [Jatropha curcas]
15 Hb_000500_100 0.122932269 - - peptide methionine sulfoxide reductase A1-like [Jatropha curcas]
16 Hb_003106_060 0.1236220362 - - hypothetical protein POPTR_0015s08140g [Populus trichocarpa]
17 Hb_002141_030 0.1240584204 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002205_070 0.1243690192 - - PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1 [Jatropha curcas]
19 Hb_000853_420 0.1250183535 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
20 Hb_001552_020 0.1253195413 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]

Gene co-expression network

sample Hb_164804_010 Hb_164804_010 Hb_006198_110 Hb_006198_110 Hb_164804_010--Hb_006198_110 Hb_002942_190 Hb_002942_190 Hb_164804_010--Hb_002942_190 Hb_002963_020 Hb_002963_020 Hb_164804_010--Hb_002963_020 Hb_005539_360 Hb_005539_360 Hb_164804_010--Hb_005539_360 Hb_000111_360 Hb_000111_360 Hb_164804_010--Hb_000111_360 Hb_004657_050 Hb_004657_050 Hb_164804_010--Hb_004657_050 Hb_004751_020 Hb_004751_020 Hb_006198_110--Hb_004751_020 Hb_000853_420 Hb_000853_420 Hb_006198_110--Hb_000853_420 Hb_001259_090 Hb_001259_090 Hb_006198_110--Hb_001259_090 Hb_006198_110--Hb_004657_050 Hb_003185_080 Hb_003185_080 Hb_006198_110--Hb_003185_080 Hb_000866_270 Hb_000866_270 Hb_006198_110--Hb_000866_270 Hb_026549_040 Hb_026549_040 Hb_002942_190--Hb_026549_040 Hb_000107_620 Hb_000107_620 Hb_002942_190--Hb_000107_620 Hb_000656_400 Hb_000656_400 Hb_002942_190--Hb_000656_400 Hb_008221_140 Hb_008221_140 Hb_002942_190--Hb_008221_140 Hb_001292_020 Hb_001292_020 Hb_002942_190--Hb_001292_020 Hb_002044_080 Hb_002044_080 Hb_002942_190--Hb_002044_080 Hb_002963_020--Hb_000107_620 Hb_002963_020--Hb_002942_190 Hb_002205_070 Hb_002205_070 Hb_002963_020--Hb_002205_070 Hb_017904_010 Hb_017904_010 Hb_002963_020--Hb_017904_010 Hb_000599_110 Hb_000599_110 Hb_002963_020--Hb_000599_110 Hb_112798_030 Hb_112798_030 Hb_002963_020--Hb_112798_030 Hb_005539_360--Hb_002942_190 Hb_000429_170 Hb_000429_170 Hb_005539_360--Hb_000429_170 Hb_005539_360--Hb_001292_020 Hb_005539_360--Hb_026549_040 Hb_005539_360--Hb_002963_020 Hb_000754_040 Hb_000754_040 Hb_000111_360--Hb_000754_040 Hb_006915_050 Hb_006915_050 Hb_000111_360--Hb_006915_050 Hb_008695_210 Hb_008695_210 Hb_000111_360--Hb_008695_210 Hb_002518_140 Hb_002518_140 Hb_000111_360--Hb_002518_140 Hb_002006_090 Hb_002006_090 Hb_000111_360--Hb_002006_090 Hb_001277_330 Hb_001277_330 Hb_000111_360--Hb_001277_330 Hb_023226_040 Hb_023226_040 Hb_004657_050--Hb_023226_040 Hb_028995_040 Hb_028995_040 Hb_004657_050--Hb_028995_040 Hb_011224_110 Hb_011224_110 Hb_004657_050--Hb_011224_110 Hb_002007_060 Hb_002007_060 Hb_004657_050--Hb_002007_060 Hb_004931_090 Hb_004931_090 Hb_004657_050--Hb_004931_090 Hb_004657_050--Hb_000866_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.44943 0.754506 0.270766 0.340795 0.791655 0.791199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.60158 1.25922 1.02975 0.394657 0.913756

CAGE analysis