Hb_005539_360

Information

Type -
Description -
Location Contig5539: 285132-288553
Sequence    

Annotation

kegg
ID rcu:RCOM_0463540
description kinesin light chain, putative
nr
ID XP_002532368.1
description kinesin light chain, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T299
description Kinesin light chain, putative OS=Ricinus communis GN=RCOM_0463540 PE=4 SV=1
Gene Ontology
ID GO:0005515
description kinesin light

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48411: 286768-288420
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005539_360 0.0 - - kinesin light chain, putative [Ricinus communis]
2 Hb_002942_190 0.0997403376 - - poly(A) polymerase, putative [Ricinus communis]
3 Hb_000429_170 0.1003185766 - - PREDICTED: adenylosuccinate synthetase 2, chloroplastic [Jatropha curcas]
4 Hb_001292_020 0.1011131133 - - PREDICTED: keratin, type II cytoskeletal 5 isoform X1 [Sesamum indicum]
5 Hb_026549_040 0.1067762595 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
6 Hb_164804_010 0.1077761437 - - JHL23J11.8 [Jatropha curcas]
7 Hb_002963_020 0.111378608 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005000_070 0.1125590697 - - hypothetical protein POPTR_0012s01650g [Populus trichocarpa]
9 Hb_000834_270 0.1138216311 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
10 Hb_000107_620 0.1169667485 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
11 Hb_008221_140 0.1195142026 - - PREDICTED: uncharacterized protein LOC105644226 [Jatropha curcas]
12 Hb_000111_360 0.1227828497 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004751_020 0.1229762946 - - PREDICTED: uncharacterized protein LOC105648266 [Jatropha curcas]
14 Hb_001545_140 0.1242930744 transcription factor TF Family: NAC -
15 Hb_001898_160 0.124968672 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
16 Hb_001083_020 0.1250594846 - - -
17 Hb_008878_030 0.1256241497 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
18 Hb_010080_090 0.1257247994 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Jatropha curcas]
19 Hb_004657_050 0.1267555225 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
20 Hb_004048_110 0.1278694542 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_005539_360 Hb_005539_360 Hb_002942_190 Hb_002942_190 Hb_005539_360--Hb_002942_190 Hb_000429_170 Hb_000429_170 Hb_005539_360--Hb_000429_170 Hb_001292_020 Hb_001292_020 Hb_005539_360--Hb_001292_020 Hb_026549_040 Hb_026549_040 Hb_005539_360--Hb_026549_040 Hb_164804_010 Hb_164804_010 Hb_005539_360--Hb_164804_010 Hb_002963_020 Hb_002963_020 Hb_005539_360--Hb_002963_020 Hb_002942_190--Hb_026549_040 Hb_000107_620 Hb_000107_620 Hb_002942_190--Hb_000107_620 Hb_000656_400 Hb_000656_400 Hb_002942_190--Hb_000656_400 Hb_008221_140 Hb_008221_140 Hb_002942_190--Hb_008221_140 Hb_002942_190--Hb_001292_020 Hb_002044_080 Hb_002044_080 Hb_002942_190--Hb_002044_080 Hb_002253_070 Hb_002253_070 Hb_000429_170--Hb_002253_070 Hb_007924_020 Hb_007924_020 Hb_000429_170--Hb_007924_020 Hb_034299_060 Hb_034299_060 Hb_000429_170--Hb_034299_060 Hb_000622_040 Hb_000622_040 Hb_000429_170--Hb_000622_040 Hb_003151_050 Hb_003151_050 Hb_000429_170--Hb_003151_050 Hb_000834_270 Hb_000834_270 Hb_000429_170--Hb_000834_270 Hb_001292_020--Hb_026549_040 Hb_002686_020 Hb_002686_020 Hb_001292_020--Hb_002686_020 Hb_004048_110 Hb_004048_110 Hb_001292_020--Hb_004048_110 Hb_008878_030 Hb_008878_030 Hb_001292_020--Hb_008878_030 Hb_002232_440 Hb_002232_440 Hb_001292_020--Hb_002232_440 Hb_000479_090 Hb_000479_090 Hb_026549_040--Hb_000479_090 Hb_026549_040--Hb_002686_020 Hb_000384_100 Hb_000384_100 Hb_026549_040--Hb_000384_100 Hb_012675_050 Hb_012675_050 Hb_026549_040--Hb_012675_050 Hb_006198_110 Hb_006198_110 Hb_164804_010--Hb_006198_110 Hb_164804_010--Hb_002942_190 Hb_164804_010--Hb_002963_020 Hb_000111_360 Hb_000111_360 Hb_164804_010--Hb_000111_360 Hb_004657_050 Hb_004657_050 Hb_164804_010--Hb_004657_050 Hb_002963_020--Hb_000107_620 Hb_002963_020--Hb_002942_190 Hb_002205_070 Hb_002205_070 Hb_002963_020--Hb_002205_070 Hb_017904_010 Hb_017904_010 Hb_002963_020--Hb_017904_010 Hb_000599_110 Hb_000599_110 Hb_002963_020--Hb_000599_110 Hb_112798_030 Hb_112798_030 Hb_002963_020--Hb_112798_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.57011 0.55632 0.309777 0.182508 0.90971 0.795979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.70686 2.04102 1.5593 0.686821 1.00789

CAGE analysis