Hb_000329_050

Information

Type -
Description -
Location Contig329: 27210-28726
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_050 0.0 - - -
2 Hb_000805_260 0.1991407468 - - PREDICTED: uncharacterized protein LOC105650295 isoform X1 [Jatropha curcas]
3 Hb_002843_050 0.1998029836 - - scab resistance family protein [Populus trichocarpa]
4 Hb_020499_010 0.2046289382 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_135611_010 0.2090741967 - - PREDICTED: uncharacterized protein LOC105142085 [Populus euphratica]
6 Hb_052764_090 0.2108917272 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002192_070 0.2133975632 - - -
8 Hb_000310_080 0.2134609506 - - hypothetical protein EUTSA_v10023249mg [Eutrema salsugineum]
9 Hb_007305_010 0.2155517039 - - PREDICTED: girdin-like [Jatropha curcas]
10 Hb_001252_180 0.2156504889 desease resistance Gene Name: DUF3542 conserved hypothetical protein [Ricinus communis]
11 Hb_000729_050 0.2219371419 - - Pinin, putative [Ricinus communis]
12 Hb_000668_010 0.2235352652 - - PREDICTED: probable beta-D-xylosidase 7 [Jatropha curcas]
13 Hb_000544_040 0.2239717259 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
14 Hb_003878_120 0.2239810622 transcription factor TF Family: MBF1 PREDICTED: multiprotein-bridging factor 1b-like [Elaeis guineensis]
15 Hb_000072_150 0.2245534291 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
16 Hb_001846_060 0.2266711645 - - hypothetical protein RCOM_0992860 [Ricinus communis]
17 Hb_055773_010 0.2284120412 - - -
18 Hb_027405_020 0.2285772961 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
19 Hb_095471_010 0.2288497091 - - PREDICTED: putative sodium-coupled neutral amino acid transporter 7 [Jatropha curcas]
20 Hb_000100_070 0.23037661 - - PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000329_050 Hb_000329_050 Hb_000805_260 Hb_000805_260 Hb_000329_050--Hb_000805_260 Hb_002843_050 Hb_002843_050 Hb_000329_050--Hb_002843_050 Hb_020499_010 Hb_020499_010 Hb_000329_050--Hb_020499_010 Hb_135611_010 Hb_135611_010 Hb_000329_050--Hb_135611_010 Hb_052764_090 Hb_052764_090 Hb_000329_050--Hb_052764_090 Hb_002192_070 Hb_002192_070 Hb_000329_050--Hb_002192_070 Hb_002675_040 Hb_002675_040 Hb_000805_260--Hb_002675_040 Hb_033594_020 Hb_033594_020 Hb_000805_260--Hb_033594_020 Hb_003656_160 Hb_003656_160 Hb_000805_260--Hb_003656_160 Hb_008143_030 Hb_008143_030 Hb_000805_260--Hb_008143_030 Hb_001900_120 Hb_001900_120 Hb_000805_260--Hb_001900_120 Hb_002301_220 Hb_002301_220 Hb_000805_260--Hb_002301_220 Hb_002804_050 Hb_002804_050 Hb_002843_050--Hb_002804_050 Hb_055773_010 Hb_055773_010 Hb_002843_050--Hb_055773_010 Hb_105085_010 Hb_105085_010 Hb_002843_050--Hb_105085_010 Hb_000735_120 Hb_000735_120 Hb_002843_050--Hb_000735_120 Hb_005122_060 Hb_005122_060 Hb_002843_050--Hb_005122_060 Hb_001259_030 Hb_001259_030 Hb_002843_050--Hb_001259_030 Hb_000376_090 Hb_000376_090 Hb_020499_010--Hb_000376_090 Hb_000115_310 Hb_000115_310 Hb_020499_010--Hb_000115_310 Hb_039894_010 Hb_039894_010 Hb_020499_010--Hb_039894_010 Hb_027405_020 Hb_027405_020 Hb_020499_010--Hb_027405_020 Hb_002893_020 Hb_002893_020 Hb_020499_010--Hb_002893_020 Hb_000589_040 Hb_000589_040 Hb_020499_010--Hb_000589_040 Hb_148909_010 Hb_148909_010 Hb_135611_010--Hb_148909_010 Hb_004627_060 Hb_004627_060 Hb_135611_010--Hb_004627_060 Hb_000516_040 Hb_000516_040 Hb_135611_010--Hb_000516_040 Hb_000088_130 Hb_000088_130 Hb_135611_010--Hb_000088_130 Hb_000072_150 Hb_000072_150 Hb_135611_010--Hb_000072_150 Hb_135611_010--Hb_001900_120 Hb_171900_100 Hb_171900_100 Hb_052764_090--Hb_171900_100 Hb_000207_310 Hb_000207_310 Hb_052764_090--Hb_000207_310 Hb_000029_130 Hb_000029_130 Hb_052764_090--Hb_000029_130 Hb_052764_090--Hb_008143_030 Hb_001221_040 Hb_001221_040 Hb_052764_090--Hb_001221_040 Hb_001196_070 Hb_001196_070 Hb_052764_090--Hb_001196_070 Hb_000849_150 Hb_000849_150 Hb_002192_070--Hb_000849_150 Hb_003813_200 Hb_003813_200 Hb_002192_070--Hb_003813_200 Hb_000544_040 Hb_000544_040 Hb_002192_070--Hb_000544_040 Hb_000815_100 Hb_000815_100 Hb_002192_070--Hb_000815_100 Hb_000025_750 Hb_000025_750 Hb_002192_070--Hb_000025_750 Hb_002897_040 Hb_002897_040 Hb_002192_070--Hb_002897_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.1096 0.953494 0.382542 0.393323 4.3566 1.26593
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.38037 0.814908 1.964 2.25625 1.70903

CAGE analysis