Hb_052764_090

Information

Type -
Description -
Location Contig52764: 52058-54238
Sequence    

Annotation

kegg
ID rcu:RCOM_1062980
description hypothetical protein
nr
ID XP_002521429.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q5RET6
description Transmembrane protein 184C OS=Pongo abelii GN=TMEM184C PE=2 SV=1
trembl
ID B9S610
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1062980 PE=4 SV=1
Gene Ontology
ID GO:0005783
description transmembrane protein 184c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47124: 54499-54786
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052764_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_171900_100 0.1036030954 - - PREDICTED: putative uncharacterized protein DDB_G0270496 [Jatropha curcas]
3 Hb_000207_310 0.1086060907 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
4 Hb_000029_130 0.1103603182 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
5 Hb_008143_030 0.1117178551 - - PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]
6 Hb_001221_040 0.1123454265 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
7 Hb_001196_070 0.1162591449 - - nucleolar protein nop56, putative [Ricinus communis]
8 Hb_108216_040 0.1167735963 - - PREDICTED: protein arginine N-methyltransferase 2 [Jatropha curcas]
9 Hb_000729_050 0.1172942217 - - Pinin, putative [Ricinus communis]
10 Hb_003006_060 0.1204387904 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
11 Hb_003058_110 0.1213713755 - - PREDICTED: alpha-mannosidase isoform X2 [Populus euphratica]
12 Hb_002652_040 0.1216372313 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
13 Hb_125092_020 0.122293591 - - PREDICTED: nucleolin 1-like isoform X1 [Jatropha curcas]
14 Hb_002675_060 0.1259610077 - - PREDICTED: uncharacterized protein LOC105634954 isoform X2 [Jatropha curcas]
15 Hb_002893_150 0.1261234586 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
16 Hb_000035_040 0.1265248238 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
17 Hb_000540_140 0.1306797622 - - zinc binding dehydrogenase, putative [Ricinus communis]
18 Hb_001136_100 0.1311499324 - - hypothetical protein MTR_085s0013 [Medicago truncatula]
19 Hb_178968_100 0.1315519692 - - PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Populus euphratica]
20 Hb_002007_350 0.1323548611 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_052764_090 Hb_052764_090 Hb_171900_100 Hb_171900_100 Hb_052764_090--Hb_171900_100 Hb_000207_310 Hb_000207_310 Hb_052764_090--Hb_000207_310 Hb_000029_130 Hb_000029_130 Hb_052764_090--Hb_000029_130 Hb_008143_030 Hb_008143_030 Hb_052764_090--Hb_008143_030 Hb_001221_040 Hb_001221_040 Hb_052764_090--Hb_001221_040 Hb_001196_070 Hb_001196_070 Hb_052764_090--Hb_001196_070 Hb_004195_280 Hb_004195_280 Hb_171900_100--Hb_004195_280 Hb_143629_010 Hb_143629_010 Hb_171900_100--Hb_143629_010 Hb_031939_010 Hb_031939_010 Hb_171900_100--Hb_031939_010 Hb_008887_050 Hb_008887_050 Hb_171900_100--Hb_008887_050 Hb_000236_320 Hb_000236_320 Hb_171900_100--Hb_000236_320 Hb_002007_350 Hb_002007_350 Hb_171900_100--Hb_002007_350 Hb_001828_160 Hb_001828_160 Hb_000207_310--Hb_001828_160 Hb_000116_180 Hb_000116_180 Hb_000207_310--Hb_000116_180 Hb_002890_020 Hb_002890_020 Hb_000207_310--Hb_002890_020 Hb_000913_050 Hb_000913_050 Hb_000207_310--Hb_000913_050 Hb_000207_310--Hb_000029_130 Hb_108216_040 Hb_108216_040 Hb_000207_310--Hb_108216_040 Hb_010381_060 Hb_010381_060 Hb_000029_130--Hb_010381_060 Hb_000029_130--Hb_000913_050 Hb_003464_020 Hb_003464_020 Hb_000029_130--Hb_003464_020 Hb_000029_130--Hb_002890_020 Hb_009627_010 Hb_009627_010 Hb_000029_130--Hb_009627_010 Hb_001584_290 Hb_001584_290 Hb_008143_030--Hb_001584_290 Hb_008143_030--Hb_108216_040 Hb_000035_040 Hb_000035_040 Hb_008143_030--Hb_000035_040 Hb_000640_320 Hb_000640_320 Hb_008143_030--Hb_000640_320 Hb_000104_080 Hb_000104_080 Hb_008143_030--Hb_000104_080 Hb_002652_040 Hb_002652_040 Hb_008143_030--Hb_002652_040 Hb_021409_170 Hb_021409_170 Hb_001221_040--Hb_021409_170 Hb_026099_010 Hb_026099_010 Hb_001221_040--Hb_026099_010 Hb_004450_010 Hb_004450_010 Hb_001221_040--Hb_004450_010 Hb_002675_060 Hb_002675_060 Hb_001221_040--Hb_002675_060 Hb_024990_010 Hb_024990_010 Hb_001221_040--Hb_024990_010 Hb_000046_440 Hb_000046_440 Hb_001221_040--Hb_000046_440 Hb_005129_050 Hb_005129_050 Hb_001196_070--Hb_005129_050 Hb_001278_060 Hb_001278_060 Hb_001196_070--Hb_001278_060 Hb_001433_190 Hb_001433_190 Hb_001196_070--Hb_001433_190 Hb_125092_020 Hb_125092_020 Hb_001196_070--Hb_125092_020 Hb_000120_510 Hb_000120_510 Hb_001196_070--Hb_000120_510 Hb_001301_210 Hb_001301_210 Hb_001196_070--Hb_001301_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.95477 1.10776 1.52958 0.738288 5.34614 4.16053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.11221 2.03441 1.57269 3.41257 1.60926

CAGE analysis