Hb_044187_010

Information

Type -
Description -
Location Contig44187: 14-980
Sequence    

Annotation

kegg
ID tcc:TCM_003239
description hypothetical protein
nr
ID XP_012092674.1
description PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPT6
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003239 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_044187_010 0.0 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
2 Hb_001258_030 0.1509000384 - - tRNA-dihydrouridine synthase, putative [Ricinus communis]
3 Hb_000702_080 0.1574859262 - - PREDICTED: uncharacterized protein LOC105630492 [Jatropha curcas]
4 Hb_012022_070 0.1584488121 - - RecName: Full=Probable pyridoxal 5'-phosphate synthase subunit PDX1; Short=PLP synthase subunit PDX1; AltName: Full=Ethylene-inducible protein HEVER [Hevea brasiliensis]
5 Hb_012146_030 0.1588769705 - - -
6 Hb_004097_050 0.1595588241 - - PREDICTED: squalene monooxygenase-like [Jatropha curcas]
7 Hb_005237_050 0.1597098392 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105630924 [Jatropha curcas]
8 Hb_008785_040 0.1662510214 - - PREDICTED: DNA repair protein UVH3 [Jatropha curcas]
9 Hb_002681_070 0.1704465015 - - PREDICTED: uncharacterized protein LOC105633833 isoform X1 [Jatropha curcas]
10 Hb_086639_040 0.1719682709 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
11 Hb_035755_010 0.1757451389 - - unknown [Populus trichocarpa]
12 Hb_001546_060 0.1789816189 - - PREDICTED: uncharacterized protein LOC105133943 isoform X4 [Populus euphratica]
13 Hb_000819_080 0.1823851451 - - Plastid-lipid-associated protein, chloroplast precursor, putative [Ricinus communis]
14 Hb_006117_040 0.1831611996 - - PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
15 Hb_032258_030 0.1832845479 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
16 Hb_000465_190 0.1834105767 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X2 [Jatropha curcas]
17 Hb_005253_030 0.1845083364 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_000087_140 0.1850394266 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27270 isoform X1 [Jatropha curcas]
19 Hb_000130_260 0.1893851882 rubber biosynthesis Gene Name: Dimethyallyltransferase PREDICTED: tRNA dimethylallyltransferase 9 isoform X1 [Jatropha curcas]
20 Hb_005496_130 0.1905068491 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_044187_010 Hb_044187_010 Hb_001258_030 Hb_001258_030 Hb_044187_010--Hb_001258_030 Hb_000702_080 Hb_000702_080 Hb_044187_010--Hb_000702_080 Hb_012022_070 Hb_012022_070 Hb_044187_010--Hb_012022_070 Hb_012146_030 Hb_012146_030 Hb_044187_010--Hb_012146_030 Hb_004097_050 Hb_004097_050 Hb_044187_010--Hb_004097_050 Hb_005237_050 Hb_005237_050 Hb_044187_010--Hb_005237_050 Hb_086639_040 Hb_086639_040 Hb_001258_030--Hb_086639_040 Hb_009382_010 Hb_009382_010 Hb_001258_030--Hb_009382_010 Hb_001258_030--Hb_005237_050 Hb_000352_270 Hb_000352_270 Hb_001258_030--Hb_000352_270 Hb_000836_530 Hb_000836_530 Hb_001258_030--Hb_000836_530 Hb_082609_010 Hb_082609_010 Hb_001258_030--Hb_082609_010 Hb_004241_020 Hb_004241_020 Hb_000702_080--Hb_004241_020 Hb_000702_080--Hb_005237_050 Hb_000107_570 Hb_000107_570 Hb_000702_080--Hb_000107_570 Hb_002217_260 Hb_002217_260 Hb_000702_080--Hb_002217_260 Hb_000130_260 Hb_000130_260 Hb_000702_080--Hb_000130_260 Hb_000297_150 Hb_000297_150 Hb_000702_080--Hb_000297_150 Hb_002154_100 Hb_002154_100 Hb_012022_070--Hb_002154_100 Hb_008785_040 Hb_008785_040 Hb_012022_070--Hb_008785_040 Hb_006502_090 Hb_006502_090 Hb_012022_070--Hb_006502_090 Hb_002681_070 Hb_002681_070 Hb_012022_070--Hb_002681_070 Hb_012022_070--Hb_004097_050 Hb_006913_030 Hb_006913_030 Hb_012022_070--Hb_006913_030 Hb_012146_030--Hb_002217_260 Hb_001951_180 Hb_001951_180 Hb_012146_030--Hb_001951_180 Hb_000087_140 Hb_000087_140 Hb_012146_030--Hb_000087_140 Hb_012146_030--Hb_000702_080 Hb_006054_050 Hb_006054_050 Hb_012146_030--Hb_006054_050 Hb_001080_090 Hb_001080_090 Hb_012146_030--Hb_001080_090 Hb_032258_030 Hb_032258_030 Hb_004097_050--Hb_032258_030 Hb_000329_140 Hb_000329_140 Hb_004097_050--Hb_000329_140 Hb_004097_050--Hb_008785_040 Hb_035755_010 Hb_035755_010 Hb_004097_050--Hb_035755_010 Hb_000373_280 Hb_000373_280 Hb_004097_050--Hb_000373_280 Hb_003020_220 Hb_003020_220 Hb_005237_050--Hb_003020_220 Hb_006420_050 Hb_006420_050 Hb_005237_050--Hb_006420_050 Hb_001049_110 Hb_001049_110 Hb_005237_050--Hb_001049_110 Hb_005116_050 Hb_005116_050 Hb_005237_050--Hb_005116_050 Hb_005237_050--Hb_082609_010 Hb_018133_090 Hb_018133_090 Hb_005237_050--Hb_018133_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.412503 0.235523 0.186539 0.0468141 0.751502 0.326271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.372768 0.732826 0.355448 0.414409 1.08526

CAGE analysis