Hb_006634_020

Information

Type -
Description -
Location Contig6634: 6516-7749
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53109: 5995-7817
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006634_020 0.0 - - -
2 Hb_034350_020 0.1822366781 - - PREDICTED: uncharacterized protein LOC105636191 [Jatropha curcas]
3 Hb_000707_060 0.2062385424 - - -
4 Hb_000227_250 0.2075348901 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
5 Hb_002374_280 0.2096933914 - - -
6 Hb_000218_030 0.2099544043 - - -
7 Hb_000003_340 0.2119588274 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]
8 Hb_004440_040 0.212374971 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_001504_190 0.2151181267 - - double-stranded RNA binding protein, putative [Ricinus communis]
10 Hb_009393_220 0.215895382 transcription factor TF Family: Tify JAZ11 [Hevea brasiliensis]
11 Hb_003435_050 0.2164862981 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Jatropha curcas]
12 Hb_000283_130 0.2168925365 - - PREDICTED: PRA1 family protein E-like [Populus euphratica]
13 Hb_061411_010 0.2188415677 - - PREDICTED: ATPase WRNIP1 [Jatropha curcas]
14 Hb_000317_060 0.2190110443 - - PREDICTED: uncharacterized protein LOC105647051 [Jatropha curcas]
15 Hb_000012_140 0.2191176794 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000487_420 0.220110547 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g04390 [Jatropha curcas]
17 Hb_031403_020 0.221027271 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
18 Hb_003430_030 0.2213750474 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
19 Hb_004136_040 0.2225069258 - - putative protein kinase [Arabidopsis thaliana]
20 Hb_148392_010 0.2229171354 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]

Gene co-expression network

sample Hb_006634_020 Hb_006634_020 Hb_034350_020 Hb_034350_020 Hb_006634_020--Hb_034350_020 Hb_000707_060 Hb_000707_060 Hb_006634_020--Hb_000707_060 Hb_000227_250 Hb_000227_250 Hb_006634_020--Hb_000227_250 Hb_002374_280 Hb_002374_280 Hb_006634_020--Hb_002374_280 Hb_000218_030 Hb_000218_030 Hb_006634_020--Hb_000218_030 Hb_000003_340 Hb_000003_340 Hb_006634_020--Hb_000003_340 Hb_000963_130 Hb_000963_130 Hb_034350_020--Hb_000963_130 Hb_005332_020 Hb_005332_020 Hb_034350_020--Hb_005332_020 Hb_001953_150 Hb_001953_150 Hb_034350_020--Hb_001953_150 Hb_034350_020--Hb_000227_250 Hb_001143_250 Hb_001143_250 Hb_034350_020--Hb_001143_250 Hb_000012_140 Hb_000012_140 Hb_034350_020--Hb_000012_140 Hb_134951_010 Hb_134951_010 Hb_000707_060--Hb_134951_010 Hb_002284_280 Hb_002284_280 Hb_000707_060--Hb_002284_280 Hb_000707_060--Hb_000227_250 Hb_001486_080 Hb_001486_080 Hb_000707_060--Hb_001486_080 Hb_000732_140 Hb_000732_140 Hb_000707_060--Hb_000732_140 Hb_009393_220 Hb_009393_220 Hb_000707_060--Hb_009393_220 Hb_005883_010 Hb_005883_010 Hb_000227_250--Hb_005883_010 Hb_005188_060 Hb_005188_060 Hb_000227_250--Hb_005188_060 Hb_000140_330 Hb_000140_330 Hb_000227_250--Hb_000140_330 Hb_001652_080 Hb_001652_080 Hb_000227_250--Hb_001652_080 Hb_000181_120 Hb_000181_120 Hb_000227_250--Hb_000181_120 Hb_007943_120 Hb_007943_120 Hb_000227_250--Hb_007943_120 Hb_000487_420 Hb_000487_420 Hb_002374_280--Hb_000487_420 Hb_002374_280--Hb_000181_120 Hb_004976_020 Hb_004976_020 Hb_002374_280--Hb_004976_020 Hb_000649_070 Hb_000649_070 Hb_002374_280--Hb_000649_070 Hb_028900_010 Hb_028900_010 Hb_002374_280--Hb_028900_010 Hb_012753_170 Hb_012753_170 Hb_002374_280--Hb_012753_170 Hb_001564_080 Hb_001564_080 Hb_000218_030--Hb_001564_080 Hb_002546_020 Hb_002546_020 Hb_000218_030--Hb_002546_020 Hb_000243_380 Hb_000243_380 Hb_000218_030--Hb_000243_380 Hb_000567_210 Hb_000567_210 Hb_000218_030--Hb_000567_210 Hb_002745_010 Hb_002745_010 Hb_000218_030--Hb_002745_010 Hb_001348_150 Hb_001348_150 Hb_000218_030--Hb_001348_150 Hb_001504_190 Hb_001504_190 Hb_000003_340--Hb_001504_190 Hb_000120_420 Hb_000120_420 Hb_000003_340--Hb_000120_420 Hb_000181_360 Hb_000181_360 Hb_000003_340--Hb_000181_360 Hb_004136_040 Hb_004136_040 Hb_000003_340--Hb_004136_040 Hb_000449_050 Hb_000449_050 Hb_000003_340--Hb_000449_050 Hb_001511_110 Hb_001511_110 Hb_000003_340--Hb_001511_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.67126 2.01654 0.826932 0.114922 0.921362 0.423039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.929324 0.437963 0.236255 0.621356 1.03878

CAGE analysis