Hb_034350_020

Information

Type -
Description -
Location Contig34350: 14139-15336
Sequence    

Annotation

kegg
ID rcu:RCOM_1536620
description hypothetical protein
nr
ID XP_012074783.1
description PREDICTED: uncharacterized protein LOC105636191 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LMH3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14917 PE=3 SV=1
Gene Ontology
ID GO:0097159
description dna mismatch repair protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034350_020 0.0 - - PREDICTED: uncharacterized protein LOC105636191 [Jatropha curcas]
2 Hb_000963_130 0.1166887164 - - RNA m5u methyltransferase, putative [Ricinus communis]
3 Hb_005332_020 0.1201396903 transcription factor TF Family: SNF2 dead box ATP-dependent RNA helicase, putative [Ricinus communis]
4 Hb_001953_150 0.1236187775 - - PREDICTED: protein DEK isoform X2 [Jatropha curcas]
5 Hb_000227_250 0.1260883245 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
6 Hb_001143_250 0.1271973157 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
7 Hb_000012_140 0.1312260659 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008103_080 0.1316855762 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
9 Hb_000160_210 0.1322810785 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000917_320 0.1344514105 - - PREDICTED: uncharacterized protein LOC105641975 isoform X1 [Jatropha curcas]
11 Hb_003794_010 0.1362658538 - - PREDICTED: uncharacterized protein LOC105641013 [Jatropha curcas]
12 Hb_000849_020 0.1363606477 - - PREDICTED: uncharacterized protein LOC105644228 isoform X1 [Jatropha curcas]
13 Hb_000009_090 0.1369220852 transcription factor TF Family: bZIP G-box-binding factor, putative [Ricinus communis]
14 Hb_138842_010 0.1377742309 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
15 Hb_000402_120 0.1405270688 - - PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
16 Hb_008887_020 0.1414328397 - - PREDICTED: uncharacterized protein LOC105636191 [Jatropha curcas]
17 Hb_000922_140 0.1414619253 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
18 Hb_001545_200 0.1445358144 - - PREDICTED: uncharacterized oxidoreductase At4g09670 [Jatropha curcas]
19 Hb_007007_060 0.144581352 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
20 Hb_007307_020 0.1459218518 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_034350_020 Hb_034350_020 Hb_000963_130 Hb_000963_130 Hb_034350_020--Hb_000963_130 Hb_005332_020 Hb_005332_020 Hb_034350_020--Hb_005332_020 Hb_001953_150 Hb_001953_150 Hb_034350_020--Hb_001953_150 Hb_000227_250 Hb_000227_250 Hb_034350_020--Hb_000227_250 Hb_001143_250 Hb_001143_250 Hb_034350_020--Hb_001143_250 Hb_000012_140 Hb_000012_140 Hb_034350_020--Hb_000012_140 Hb_028872_120 Hb_028872_120 Hb_000963_130--Hb_028872_120 Hb_000963_130--Hb_005332_020 Hb_008887_020 Hb_008887_020 Hb_000963_130--Hb_008887_020 Hb_004079_120 Hb_004079_120 Hb_000963_130--Hb_004079_120 Hb_000922_140 Hb_000922_140 Hb_000963_130--Hb_000922_140 Hb_022256_060 Hb_022256_060 Hb_000963_130--Hb_022256_060 Hb_005332_020--Hb_001953_150 Hb_002422_050 Hb_002422_050 Hb_005332_020--Hb_002422_050 Hb_005332_020--Hb_008887_020 Hb_000152_260 Hb_000152_260 Hb_005332_020--Hb_000152_260 Hb_005332_020--Hb_001143_250 Hb_002374_260 Hb_002374_260 Hb_005332_020--Hb_002374_260 Hb_001953_150--Hb_000922_140 Hb_080147_040 Hb_080147_040 Hb_001953_150--Hb_080147_040 Hb_001799_050 Hb_001799_050 Hb_001953_150--Hb_001799_050 Hb_001953_150--Hb_001143_250 Hb_000270_460 Hb_000270_460 Hb_001953_150--Hb_000270_460 Hb_005883_010 Hb_005883_010 Hb_000227_250--Hb_005883_010 Hb_005188_060 Hb_005188_060 Hb_000227_250--Hb_005188_060 Hb_000140_330 Hb_000140_330 Hb_000227_250--Hb_000140_330 Hb_001652_080 Hb_001652_080 Hb_000227_250--Hb_001652_080 Hb_000181_120 Hb_000181_120 Hb_000227_250--Hb_000181_120 Hb_007943_120 Hb_007943_120 Hb_000227_250--Hb_007943_120 Hb_000418_140 Hb_000418_140 Hb_001143_250--Hb_000418_140 Hb_003633_070 Hb_003633_070 Hb_001143_250--Hb_003633_070 Hb_001143_250--Hb_001799_050 Hb_002022_070 Hb_002022_070 Hb_001143_250--Hb_002022_070 Hb_007307_020 Hb_007307_020 Hb_001143_250--Hb_007307_020 Hb_027760_080 Hb_027760_080 Hb_001143_250--Hb_027760_080 Hb_005539_090 Hb_005539_090 Hb_000012_140--Hb_005539_090 Hb_007576_120 Hb_007576_120 Hb_000012_140--Hb_007576_120 Hb_000012_140--Hb_001143_250 Hb_000012_140--Hb_002022_070 Hb_034243_020 Hb_034243_020 Hb_000012_140--Hb_034243_020 Hb_004543_030 Hb_004543_030 Hb_000012_140--Hb_004543_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.09571 2.1452 1.77348 0.399876 1.92346 1.78894
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.873288 1.02969 1.21699 1.31602 2.29188

CAGE analysis