Hb_001417_020

Information

Type -
Description -
Location Contig1417: 39842-42526
Sequence    

Annotation

kegg
ID sot:102596609
description uncharacterized LOC102596609
nr
ID XP_010520633.1
description PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
swissprot
ID -
description -
trembl
ID Q6L3P1
description Putative methyltransferase family protein OS=Solanum demissum GN=SDM1_42t00008 PE=4 SV=2
Gene Ontology
ID GO:0016779
description dna-directed rna polymerase i subunit rpa1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001417_020 0.0 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
2 Hb_008123_010 0.1936711212 - - -
3 Hb_154141_010 0.2194576773 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
4 Hb_000599_230 0.2207725018 - - -
5 Hb_090530_010 0.2324022731 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
6 Hb_031658_040 0.2381748137 - - -
7 Hb_012165_020 0.239529821 - - hypothetical protein POPTR_0007s05770g [Populus trichocarpa]
8 Hb_001516_050 0.2423507 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
9 Hb_007313_100 0.2425725688 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
10 Hb_007313_060 0.2441365087 - - PREDICTED: paramyosin [Jatropha curcas]
11 Hb_000463_030 0.2471793953 - - -
12 Hb_004785_070 0.2479923488 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
13 Hb_024714_080 0.2568409136 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
14 Hb_008092_080 0.2570214279 - - elongation factor ts, putative [Ricinus communis]
15 Hb_006618_050 0.2571263611 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
16 Hb_023675_030 0.2583731518 - - -
17 Hb_003058_020 0.2586835711 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
18 Hb_001461_020 0.2615345882 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
19 Hb_085083_020 0.2648395936 - - PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]
20 Hb_002495_060 0.2654197353 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001417_020 Hb_001417_020 Hb_008123_010 Hb_008123_010 Hb_001417_020--Hb_008123_010 Hb_154141_010 Hb_154141_010 Hb_001417_020--Hb_154141_010 Hb_000599_230 Hb_000599_230 Hb_001417_020--Hb_000599_230 Hb_090530_010 Hb_090530_010 Hb_001417_020--Hb_090530_010 Hb_031658_040 Hb_031658_040 Hb_001417_020--Hb_031658_040 Hb_012165_020 Hb_012165_020 Hb_001417_020--Hb_012165_020 Hb_008123_010--Hb_090530_010 Hb_011616_020 Hb_011616_020 Hb_008123_010--Hb_011616_020 Hb_008123_010--Hb_031658_040 Hb_002276_070 Hb_002276_070 Hb_008123_010--Hb_002276_070 Hb_007313_100 Hb_007313_100 Hb_008123_010--Hb_007313_100 Hb_002495_060 Hb_002495_060 Hb_008123_010--Hb_002495_060 Hb_022958_010 Hb_022958_010 Hb_154141_010--Hb_022958_010 Hb_154141_010--Hb_000599_230 Hb_006905_030 Hb_006905_030 Hb_154141_010--Hb_006905_030 Hb_154141_010--Hb_090530_010 Hb_000010_290 Hb_000010_290 Hb_154141_010--Hb_000010_290 Hb_154141_010--Hb_007313_100 Hb_004735_020 Hb_004735_020 Hb_000599_230--Hb_004735_020 Hb_002681_080 Hb_002681_080 Hb_000599_230--Hb_002681_080 Hb_002740_190 Hb_002740_190 Hb_000599_230--Hb_002740_190 Hb_010757_030 Hb_010757_030 Hb_000599_230--Hb_010757_030 Hb_000479_170 Hb_000479_170 Hb_000599_230--Hb_000479_170 Hb_025477_050 Hb_025477_050 Hb_000599_230--Hb_025477_050 Hb_008092_080 Hb_008092_080 Hb_090530_010--Hb_008092_080 Hb_090530_010--Hb_002740_190 Hb_024714_080 Hb_024714_080 Hb_090530_010--Hb_024714_080 Hb_028707_110 Hb_028707_110 Hb_090530_010--Hb_028707_110 Hb_003077_130 Hb_003077_130 Hb_090530_010--Hb_003077_130 Hb_006618_050 Hb_006618_050 Hb_031658_040--Hb_006618_050 Hb_002368_070 Hb_002368_070 Hb_031658_040--Hb_002368_070 Hb_065408_010 Hb_065408_010 Hb_031658_040--Hb_065408_010 Hb_003506_050 Hb_003506_050 Hb_031658_040--Hb_003506_050 Hb_001366_160 Hb_001366_160 Hb_031658_040--Hb_001366_160 Hb_015026_080 Hb_015026_080 Hb_031658_040--Hb_015026_080 Hb_005288_110 Hb_005288_110 Hb_012165_020--Hb_005288_110 Hb_012165_020--Hb_000599_230 Hb_001675_050 Hb_001675_050 Hb_012165_020--Hb_001675_050 Hb_012165_020--Hb_007313_100 Hb_012165_020--Hb_002681_080 Hb_012165_020--Hb_002276_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.908557 0.233144 0.144726 0.147358 0.214961 0.348459
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0862187 0 0.120288 0.27633 1.46592

CAGE analysis