Hb_008727_070

Information

Type -
Description -
Location Contig8727: 51437-53289
Sequence    

Annotation

kegg
ID cic:CICLE_v10012988mg
description hypothetical protein
nr
ID XP_008673029.1
description PREDICTED: 16.9 kDa class I heat shock protein 1 isoform X1 [Zea mays]
swissprot
ID Q7EZ57
description 18.8 kDa class V heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.8 PE=2 SV=1
trembl
ID A0A067D4J5
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031640mg PE=3 SV=1
Gene Ontology
ID GO:0005737
description kda class i heat shock protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008727_070 0.0 - - PREDICTED: 16.9 kDa class I heat shock protein 1 isoform X1 [Zea mays]
2 Hb_000171_040 0.2852803854 - - -
3 Hb_005975_020 0.2924121821 - - -
4 Hb_003362_060 0.3014481581 - - -
5 Hb_000574_140 0.3022303059 - - -
6 Hb_131949_010 0.3090988223 - - PREDICTED: uncharacterized protein LOC104227863, partial [Nicotiana sylvestris]
7 Hb_020570_010 0.3177501725 - - PREDICTED: uncharacterized protein LOC104249812 [Nicotiana sylvestris]
8 Hb_084426_010 0.3284944355 - - -
9 Hb_000107_320 0.3352068036 - - hypothetical protein POPTR_0004s21930g [Populus trichocarpa]
10 Hb_095853_010 0.339371735 - - -
11 Hb_184798_040 0.340937274 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
12 Hb_005344_010 0.3413819357 - - PREDICTED: uncharacterized protein LOC102597679 [Solanum tuberosum]
13 Hb_002311_230 0.3504086965 - - -
14 Hb_006816_510 0.3577835515 - - Pectinesterase inhibitor, putative [Ricinus communis]
15 Hb_004899_280 0.3688315431 - - -
16 Hb_040290_010 0.3739009019 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_070745_010 0.3750204711 - - PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Populus euphratica]
18 Hb_008556_020 0.3781611424 - - -
19 Hb_000146_060 0.3786135437 - - -
20 Hb_004687_010 0.380732925 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]

Gene co-expression network

sample Hb_008727_070 Hb_008727_070 Hb_000171_040 Hb_000171_040 Hb_008727_070--Hb_000171_040 Hb_005975_020 Hb_005975_020 Hb_008727_070--Hb_005975_020 Hb_003362_060 Hb_003362_060 Hb_008727_070--Hb_003362_060 Hb_000574_140 Hb_000574_140 Hb_008727_070--Hb_000574_140 Hb_131949_010 Hb_131949_010 Hb_008727_070--Hb_131949_010 Hb_020570_010 Hb_020570_010 Hb_008727_070--Hb_020570_010 Hb_000171_040--Hb_003362_060 Hb_000171_040--Hb_131949_010 Hb_006816_510 Hb_006816_510 Hb_000171_040--Hb_006816_510 Hb_184798_040 Hb_184798_040 Hb_000171_040--Hb_184798_040 Hb_084426_010 Hb_084426_010 Hb_000171_040--Hb_084426_010 Hb_000171_040--Hb_005975_020 Hb_000107_320 Hb_000107_320 Hb_005975_020--Hb_000107_320 Hb_004899_280 Hb_004899_280 Hb_005975_020--Hb_004899_280 Hb_005975_020--Hb_003362_060 Hb_005975_020--Hb_131949_010 Hb_005975_020--Hb_184798_040 Hb_003362_060--Hb_131949_010 Hb_003362_060--Hb_084426_010 Hb_003362_060--Hb_184798_040 Hb_034569_020 Hb_034569_020 Hb_003362_060--Hb_034569_020 Hb_003362_060--Hb_004899_280 Hb_004241_030 Hb_004241_030 Hb_000574_140--Hb_004241_030 Hb_004687_010 Hb_004687_010 Hb_000574_140--Hb_004687_010 Hb_011280_020 Hb_011280_020 Hb_000574_140--Hb_011280_020 Hb_000505_120 Hb_000505_120 Hb_000574_140--Hb_000505_120 Hb_006103_040 Hb_006103_040 Hb_000574_140--Hb_006103_040 Hb_001241_050 Hb_001241_050 Hb_000574_140--Hb_001241_050 Hb_131949_010--Hb_084426_010 Hb_131949_010--Hb_184798_040 Hb_131949_010--Hb_034569_020 Hb_131949_010--Hb_004899_280 Hb_000488_020 Hb_000488_020 Hb_020570_010--Hb_000488_020 Hb_004920_030 Hb_004920_030 Hb_020570_010--Hb_004920_030 Hb_000540_010 Hb_000540_010 Hb_020570_010--Hb_000540_010 Hb_007333_020 Hb_007333_020 Hb_020570_010--Hb_007333_020 Hb_070745_010 Hb_070745_010 Hb_020570_010--Hb_070745_010 Hb_143863_010 Hb_143863_010 Hb_020570_010--Hb_143863_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.343031 0.599825 0 0 0.455795 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0418192 0.207943

CAGE analysis