Hb_004920_030

Information

Type transcription factor
Description TF Family: Orphans
Location Contig4920: 23199-27453
Sequence    

Annotation

kegg
ID rcu:RCOM_1347240
description histidine kinase 1 plant, putative (EC:2.7.13.3)
nr
ID XP_012083801.1
description PREDICTED: histidine kinase CKI1 [Jatropha curcas]
swissprot
ID O22267
description Histidine kinase CKI1 OS=Arabidopsis thaliana GN=CKI1 PE=1 SV=1
trembl
ID A0A067K7M4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14021 PE=4 SV=1
Gene Ontology
ID GO:0016020
description histidine kinase cki1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004920_030 0.0 transcription factor TF Family: Orphans PREDICTED: histidine kinase CKI1 [Jatropha curcas]
2 Hb_005499_010 0.152346405 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
3 Hb_091226_010 0.1599485794 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]
4 Hb_003119_050 0.1695050455 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
5 Hb_027402_040 0.171653083 - - Thioredoxin II, putative [Ricinus communis]
6 Hb_000454_140 0.176820983 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
7 Hb_000152_150 0.1802879212 - - PREDICTED: uncharacterized protein LOC105648558 [Jatropha curcas]
8 Hb_003001_070 0.1821779365 transcription factor TF Family: ERF hypothetical protein POPTR_0002s24750g [Populus trichocarpa]
9 Hb_090782_010 0.1822262573 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
10 Hb_000069_730 0.1865578982 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X1 [Jatropha curcas]
11 Hb_001565_060 0.1890658707 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial [Jatropha curcas]
12 Hb_003228_030 0.1918574256 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
13 Hb_001258_150 0.1925517796 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
14 Hb_005694_130 0.192673095 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
15 Hb_002534_050 0.1942577433 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
16 Hb_003120_050 0.1946210332 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
17 Hb_003089_030 0.1953585761 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
18 Hb_000084_240 0.1957228876 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
19 Hb_000465_080 0.1977539214 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
20 Hb_007849_050 0.1983255031 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]

Gene co-expression network

sample Hb_004920_030 Hb_004920_030 Hb_005499_010 Hb_005499_010 Hb_004920_030--Hb_005499_010 Hb_091226_010 Hb_091226_010 Hb_004920_030--Hb_091226_010 Hb_003119_050 Hb_003119_050 Hb_004920_030--Hb_003119_050 Hb_027402_040 Hb_027402_040 Hb_004920_030--Hb_027402_040 Hb_000454_140 Hb_000454_140 Hb_004920_030--Hb_000454_140 Hb_000152_150 Hb_000152_150 Hb_004920_030--Hb_000152_150 Hb_000084_240 Hb_000084_240 Hb_005499_010--Hb_000084_240 Hb_011631_010 Hb_011631_010 Hb_005499_010--Hb_011631_010 Hb_005499_010--Hb_091226_010 Hb_005499_010--Hb_000454_140 Hb_000045_260 Hb_000045_260 Hb_005499_010--Hb_000045_260 Hb_002897_050 Hb_002897_050 Hb_005499_010--Hb_002897_050 Hb_091226_010--Hb_000084_240 Hb_000163_230 Hb_000163_230 Hb_091226_010--Hb_000163_230 Hb_091226_010--Hb_000045_260 Hb_091226_010--Hb_000454_140 Hb_003078_030 Hb_003078_030 Hb_091226_010--Hb_003078_030 Hb_003119_050--Hb_027402_040 Hb_000890_010 Hb_000890_010 Hb_003119_050--Hb_000890_010 Hb_003228_030 Hb_003228_030 Hb_003119_050--Hb_003228_030 Hb_013405_150 Hb_013405_150 Hb_003119_050--Hb_013405_150 Hb_003119_050--Hb_091226_010 Hb_000152_760 Hb_000152_760 Hb_003119_050--Hb_000152_760 Hb_027402_040--Hb_003228_030 Hb_005054_310 Hb_005054_310 Hb_027402_040--Hb_005054_310 Hb_163508_010 Hb_163508_010 Hb_027402_040--Hb_163508_010 Hb_000836_370 Hb_000836_370 Hb_027402_040--Hb_000836_370 Hb_005000_300 Hb_005000_300 Hb_027402_040--Hb_005000_300 Hb_000454_140--Hb_000163_230 Hb_007849_050 Hb_007849_050 Hb_000454_140--Hb_007849_050 Hb_000454_140--Hb_000045_260 Hb_012305_140 Hb_012305_140 Hb_000454_140--Hb_012305_140 Hb_005694_130 Hb_005694_130 Hb_000454_140--Hb_005694_130 Hb_000152_150--Hb_000152_760 Hb_006538_130 Hb_006538_130 Hb_000152_150--Hb_006538_130 Hb_006132_040 Hb_006132_040 Hb_000152_150--Hb_006132_040 Hb_002107_060 Hb_002107_060 Hb_000152_150--Hb_002107_060 Hb_000187_030 Hb_000187_030 Hb_000152_150--Hb_000187_030 Hb_000152_150--Hb_003228_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0759209 0.224851 0.115705 0.0270534 0.0516504 0.014504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0246755 0.0097092 0.0186168 0.00769552 0.0415381

CAGE analysis