Hb_035935_010

Information

Type -
Description -
Location Contig35935: 53-1111
Sequence    

Annotation

kegg
ID cmo:103497647
description uncharacterized LOC103497647
nr
ID XP_009786188.1
description PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID M1DF56
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400037635 PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC104227769, partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_035935_010 0.0 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
2 Hb_001233_040 0.2178331995 - - PREDICTED: uncharacterized protein LOC105775263 [Gossypium raimondii]
3 Hb_006869_010 0.3027997541 - - unnamed protein product [Coffea canephora]
4 Hb_003813_160 0.3092996841 - - -
5 Hb_158869_010 0.3099455669 - - PREDICTED: uncharacterized protein LOC105778995 [Gossypium raimondii]
6 Hb_049717_010 0.3140900391 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]
7 Hb_003683_080 0.3181324109 - - Angio-associated migratory cell protein, putative [Ricinus communis]
8 Hb_001481_180 0.3181811557 - - plasma membrane H+-ATPase [Hevea brasiliensis]
9 Hb_002636_020 0.32032996 - - -
10 Hb_008318_010 0.3276657246 - - PREDICTED: WD repeat-containing protein 82-B isoform X1 [Jatropha curcas]
11 Hb_057207_010 0.3281056242 - - hypothetical protein F383_17010 [Gossypium arboreum]
12 Hb_000661_080 0.334997641 - - monoxygenase, putative [Ricinus communis]
13 Hb_001623_600 0.3395289601 - - PREDICTED: uncharacterized protein LOC104748784 [Camelina sativa]
14 Hb_132998_010 0.3490800334 - - hypothetical protein JCGZ_00197 [Jatropha curcas]
15 Hb_003086_120 0.3534304056 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
16 Hb_000227_130 0.3543774104 - - PREDICTED: peroxiredoxin-2F, mitochondrial [Jatropha curcas]
17 Hb_001387_020 0.3593619056 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
18 Hb_000917_010 0.3599186702 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000003_360 0.3600616393 - - Putative inactive purple acid phosphatase 27 [Glycine soja]
20 Hb_000703_270 0.3619435077 - - hypothetical protein B456_012G039600 [Gossypium raimondii]

Gene co-expression network

sample Hb_035935_010 Hb_035935_010 Hb_001233_040 Hb_001233_040 Hb_035935_010--Hb_001233_040 Hb_006869_010 Hb_006869_010 Hb_035935_010--Hb_006869_010 Hb_003813_160 Hb_003813_160 Hb_035935_010--Hb_003813_160 Hb_158869_010 Hb_158869_010 Hb_035935_010--Hb_158869_010 Hb_049717_010 Hb_049717_010 Hb_035935_010--Hb_049717_010 Hb_003683_080 Hb_003683_080 Hb_035935_010--Hb_003683_080 Hb_001733_060 Hb_001733_060 Hb_001233_040--Hb_001733_060 Hb_001233_040--Hb_003813_160 Hb_033661_010 Hb_033661_010 Hb_001233_040--Hb_033661_010 Hb_000661_080 Hb_000661_080 Hb_001233_040--Hb_000661_080 Hb_057207_010 Hb_057207_010 Hb_001233_040--Hb_057207_010 Hb_002027_150 Hb_002027_150 Hb_006869_010--Hb_002027_150 Hb_001401_080 Hb_001401_080 Hb_006869_010--Hb_001401_080 Hb_000752_050 Hb_000752_050 Hb_006869_010--Hb_000752_050 Hb_006269_050 Hb_006269_050 Hb_006869_010--Hb_006269_050 Hb_005565_060 Hb_005565_060 Hb_006869_010--Hb_005565_060 Hb_000982_110 Hb_000982_110 Hb_006869_010--Hb_000982_110 Hb_001604_050 Hb_001604_050 Hb_003813_160--Hb_001604_050 Hb_003813_160--Hb_033661_010 Hb_184403_020 Hb_184403_020 Hb_003813_160--Hb_184403_020 Hb_000753_190 Hb_000753_190 Hb_003813_160--Hb_000753_190 Hb_011249_050 Hb_011249_050 Hb_003813_160--Hb_011249_050 Hb_158869_010--Hb_049717_010 Hb_002240_080 Hb_002240_080 Hb_158869_010--Hb_002240_080 Hb_020378_050 Hb_020378_050 Hb_158869_010--Hb_020378_050 Hb_107504_010 Hb_107504_010 Hb_158869_010--Hb_107504_010 Hb_082730_010 Hb_082730_010 Hb_158869_010--Hb_082730_010 Hb_049717_010--Hb_003813_160 Hb_002874_040 Hb_002874_040 Hb_049717_010--Hb_002874_040 Hb_001623_600 Hb_001623_600 Hb_049717_010--Hb_001623_600 Hb_049717_010--Hb_057207_010 Hb_000010_260 Hb_000010_260 Hb_003683_080--Hb_000010_260 Hb_008318_010 Hb_008318_010 Hb_003683_080--Hb_008318_010 Hb_001387_020 Hb_001387_020 Hb_003683_080--Hb_001387_020 Hb_000080_210 Hb_000080_210 Hb_003683_080--Hb_000080_210 Hb_000483_250 Hb_000483_250 Hb_003683_080--Hb_000483_250 Hb_026048_070 Hb_026048_070 Hb_003683_080--Hb_026048_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0478943 0 0 0 0 0.0374893
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0974678 0.0766603 0 0.0462084 0.0785878

CAGE analysis