Hb_000545_120

Information

Type -
Description -
Location Contig545: 238306-242754
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000545_120 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_000375_180 0.2271484699 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
3 Hb_012938_010 0.2400789173 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_000016_120 0.2459563183 - - PREDICTED: uncharacterized protein LOC104610208 [Nelumbo nucifera]
5 Hb_003124_210 0.2567756006 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005654_010 0.2989456657 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_004289_040 0.3023593056 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
8 Hb_004656_080 0.3146273398 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_006212_030 0.316191796 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
10 Hb_003020_290 0.3264907502 - - hypothetical protein CICLE_v10029104mg [Citrus clementina]
11 Hb_071130_040 0.3278006945 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007276_020 0.3282847349 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
13 Hb_002811_340 0.3302563996 - - PREDICTED: ammonium transporter 3 member 2-like [Populus euphratica]
14 Hb_145157_010 0.3323372351 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
15 Hb_008191_010 0.33305674 - - -
16 Hb_161207_010 0.3406771985 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
17 Hb_012218_020 0.3460328864 - - hypothetical protein JCGZ_14688 [Jatropha curcas]
18 Hb_005496_100 0.3535597002 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH85-like [Populus euphratica]
19 Hb_001344_030 0.3618382227 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_002602_020 0.3644742918 - - -

Gene co-expression network

sample Hb_000545_120 Hb_000545_120 Hb_000375_180 Hb_000375_180 Hb_000545_120--Hb_000375_180 Hb_012938_010 Hb_012938_010 Hb_000545_120--Hb_012938_010 Hb_000016_120 Hb_000016_120 Hb_000545_120--Hb_000016_120 Hb_003124_210 Hb_003124_210 Hb_000545_120--Hb_003124_210 Hb_005654_010 Hb_005654_010 Hb_000545_120--Hb_005654_010 Hb_004289_040 Hb_004289_040 Hb_000545_120--Hb_004289_040 Hb_000375_180--Hb_005654_010 Hb_000375_180--Hb_012938_010 Hb_071130_040 Hb_071130_040 Hb_000375_180--Hb_071130_040 Hb_001335_050 Hb_001335_050 Hb_000375_180--Hb_001335_050 Hb_000375_180--Hb_003124_210 Hb_012938_010--Hb_005654_010 Hb_012938_010--Hb_071130_040 Hb_002811_340 Hb_002811_340 Hb_012938_010--Hb_002811_340 Hb_012938_010--Hb_000016_120 Hb_156924_020 Hb_156924_020 Hb_012938_010--Hb_156924_020 Hb_000016_120--Hb_003124_210 Hb_000016_120--Hb_000375_180 Hb_000016_120--Hb_005654_010 Hb_008191_010 Hb_008191_010 Hb_000016_120--Hb_008191_010 Hb_003124_210--Hb_004289_040 Hb_001604_050 Hb_001604_050 Hb_003124_210--Hb_001604_050 Hb_049944_010 Hb_049944_010 Hb_003124_210--Hb_049944_010 Hb_005654_010--Hb_001335_050 Hb_005654_010--Hb_071130_040 Hb_104721_010 Hb_104721_010 Hb_005654_010--Hb_104721_010 Hb_107221_010 Hb_107221_010 Hb_005654_010--Hb_107221_010 Hb_032705_020 Hb_032705_020 Hb_004289_040--Hb_032705_020 Hb_145157_010 Hb_145157_010 Hb_004289_040--Hb_145157_010 Hb_014440_010 Hb_014440_010 Hb_004289_040--Hb_014440_010 Hb_004289_040--Hb_002811_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00790417 0 0 0.0048109 0.012588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0217826 0.00857108 0 0 0.0550984

CAGE analysis