Hb_014440_010

Information

Type transcription factor
Description TF Family: RWP-RK
Location Contig14440: 2165-3173
Sequence    

Annotation

kegg
ID rcu:RCOM_1241280
description transcription factor, putative
nr
ID XP_002516651.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9LVU8
description Protein RKD4 OS=Arabidopsis thaliana GN=RKD4 PE=3 SV=1
trembl
ID B9RSD2
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1241280 PE=4 SV=1
Gene Ontology
ID GO:0003700
description protein rkd4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014440_010 0.0 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
2 Hb_001818_110 0.3095682374 - - -
3 Hb_004289_040 0.309843769 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
4 Hb_178654_020 0.3257917366 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
5 Hb_156924_020 0.3259301111 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
6 Hb_000757_090 0.3344152468 - - SPla/RYanodine receptor domain-containing protein isoform 3 [Theobroma cacao]
7 Hb_000375_180 0.34100325 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
8 Hb_094852_010 0.3456355031 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
9 Hb_003938_070 0.3463160668 - - ring finger protein, putative [Ricinus communis]
10 Hb_003020_290 0.3703980038 - - hypothetical protein CICLE_v10029104mg [Citrus clementina]
11 Hb_001344_030 0.3857716176 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_000449_060 0.3870266524 - - -
13 Hb_032705_020 0.3900236384 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
14 Hb_012938_010 0.3910233372 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_001882_060 0.3911240027 - - -
16 Hb_001519_020 0.3967299773 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
17 Hb_071130_040 0.3978047967 - - conserved hypothetical protein [Ricinus communis]
18 Hb_186054_010 0.4006348764 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_000529_230 0.4018184491 - - PREDICTED: putative leucine-rich repeat-containing protein DDB_G0290503 [Prunus mume]
20 Hb_007157_010 0.4043588224 - - -

Gene co-expression network

sample Hb_014440_010 Hb_014440_010 Hb_001818_110 Hb_001818_110 Hb_014440_010--Hb_001818_110 Hb_004289_040 Hb_004289_040 Hb_014440_010--Hb_004289_040 Hb_178654_020 Hb_178654_020 Hb_014440_010--Hb_178654_020 Hb_156924_020 Hb_156924_020 Hb_014440_010--Hb_156924_020 Hb_000757_090 Hb_000757_090 Hb_014440_010--Hb_000757_090 Hb_000375_180 Hb_000375_180 Hb_014440_010--Hb_000375_180 Hb_003020_290 Hb_003020_290 Hb_001818_110--Hb_003020_290 Hb_000387_090 Hb_000387_090 Hb_001818_110--Hb_000387_090 Hb_006212_030 Hb_006212_030 Hb_001818_110--Hb_006212_030 Hb_001344_030 Hb_001344_030 Hb_001818_110--Hb_001344_030 Hb_002888_020 Hb_002888_020 Hb_001818_110--Hb_002888_020 Hb_003124_210 Hb_003124_210 Hb_004289_040--Hb_003124_210 Hb_032705_020 Hb_032705_020 Hb_004289_040--Hb_032705_020 Hb_145157_010 Hb_145157_010 Hb_004289_040--Hb_145157_010 Hb_000545_120 Hb_000545_120 Hb_004289_040--Hb_000545_120 Hb_002811_340 Hb_002811_340 Hb_004289_040--Hb_002811_340 Hb_094852_010 Hb_094852_010 Hb_178654_020--Hb_094852_010 Hb_178654_020--Hb_156924_020 Hb_178654_020--Hb_000757_090 Hb_065858_010 Hb_065858_010 Hb_178654_020--Hb_065858_010 Hb_124621_010 Hb_124621_010 Hb_178654_020--Hb_124621_010 Hb_012938_010 Hb_012938_010 Hb_178654_020--Hb_012938_010 Hb_156924_020--Hb_000757_090 Hb_156924_020--Hb_094852_010 Hb_156924_020--Hb_001344_030 Hb_186054_010 Hb_186054_010 Hb_156924_020--Hb_186054_010 Hb_156924_020--Hb_065858_010 Hb_000757_090--Hb_094852_010 Hb_000757_090--Hb_001344_030 Hb_000757_090--Hb_186054_010 Hb_000757_090--Hb_012938_010 Hb_005654_010 Hb_005654_010 Hb_000375_180--Hb_005654_010 Hb_000375_180--Hb_012938_010 Hb_000375_180--Hb_000545_120 Hb_071130_040 Hb_071130_040 Hb_000375_180--Hb_071130_040 Hb_001335_050 Hb_001335_050 Hb_000375_180--Hb_001335_050 Hb_000375_180--Hb_003124_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0577221 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0683938 0.107554 0 0 0.107842

CAGE analysis