Hb_012717_030

Information

Type -
Description -
Location Contig12717: 9072-13066
Sequence    

Annotation

kegg
ID -
description -
nr
ID WP_042943005.1
description hypothetical protein, partial [Pseudomonas fluorescens]
swissprot
ID -
description -
trembl
ID A0A0B0NVE7
description Uncharacterized protein OS=Gossypium arboreum GN=F383_16817 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012717_030 0.0 - - hypothetical protein, partial [Pseudomonas fluorescens]
2 Hb_104721_010 0.2372187678 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
3 Hb_000011_470 0.2413033461 - - PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]
4 Hb_006111_040 0.2442738399 - - PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]
5 Hb_000060_070 0.2448399551 - - hypothetical protein EUTSA_v10023188mg, partial [Eutrema salsugineum]
6 Hb_012707_020 0.2457757928 - - -
7 Hb_002200_100 0.2550094637 - - PREDICTED: pathogen-related protein-like [Jatropha curcas]
8 Hb_000043_100 0.255680832 - - PREDICTED: uncharacterized protein LOC105797583 [Gossypium raimondii]
9 Hb_162086_010 0.2644002937 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
10 Hb_186054_010 0.264735098 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_000668_210 0.2652003817 - - hypothetical protein PHAVU_006G031500g [Phaseolus vulgaris]
12 Hb_011892_010 0.2695622593 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_012753_070 0.2695647566 - - hypothetical protein VITISV_033646 [Vitis vinifera]
14 Hb_008918_030 0.2733077036 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
15 Hb_000031_200 0.2740277486 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3-like [Jatropha curcas]
16 Hb_028527_010 0.2742387835 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
17 Hb_006538_180 0.2753827718 transcription factor TF Family: C2C2-CO-like zinc finger family protein [Populus trichocarpa]
18 Hb_004656_080 0.2758367393 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_001450_010 0.2762791991 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
20 Hb_002249_200 0.2798892675 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]

Gene co-expression network

sample Hb_012717_030 Hb_012717_030 Hb_104721_010 Hb_104721_010 Hb_012717_030--Hb_104721_010 Hb_000011_470 Hb_000011_470 Hb_012717_030--Hb_000011_470 Hb_006111_040 Hb_006111_040 Hb_012717_030--Hb_006111_040 Hb_000060_070 Hb_000060_070 Hb_012717_030--Hb_000060_070 Hb_012707_020 Hb_012707_020 Hb_012717_030--Hb_012707_020 Hb_002200_100 Hb_002200_100 Hb_012717_030--Hb_002200_100 Hb_186054_010 Hb_186054_010 Hb_104721_010--Hb_186054_010 Hb_001344_030 Hb_001344_030 Hb_104721_010--Hb_001344_030 Hb_005654_010 Hb_005654_010 Hb_104721_010--Hb_005654_010 Hb_000757_090 Hb_000757_090 Hb_104721_010--Hb_000757_090 Hb_005542_170 Hb_005542_170 Hb_104721_010--Hb_005542_170 Hb_000405_010 Hb_000405_010 Hb_000011_470--Hb_000405_010 Hb_029238_030 Hb_029238_030 Hb_000011_470--Hb_029238_030 Hb_011892_010 Hb_011892_010 Hb_000011_470--Hb_011892_010 Hb_011931_090 Hb_011931_090 Hb_000011_470--Hb_011931_090 Hb_054127_020 Hb_054127_020 Hb_000011_470--Hb_054127_020 Hb_151401_010 Hb_151401_010 Hb_000011_470--Hb_151401_010 Hb_006111_040--Hb_151401_010 Hb_002529_070 Hb_002529_070 Hb_006111_040--Hb_002529_070 Hb_006111_040--Hb_000011_470 Hb_001981_020 Hb_001981_020 Hb_006111_040--Hb_001981_020 Hb_007533_050 Hb_007533_050 Hb_006111_040--Hb_007533_050 Hb_006455_020 Hb_006455_020 Hb_006111_040--Hb_006455_020 Hb_162086_010 Hb_162086_010 Hb_000060_070--Hb_162086_010 Hb_007575_010 Hb_007575_010 Hb_000060_070--Hb_007575_010 Hb_000031_200 Hb_000031_200 Hb_000060_070--Hb_000031_200 Hb_003645_050 Hb_003645_050 Hb_000060_070--Hb_003645_050 Hb_144838_010 Hb_144838_010 Hb_000060_070--Hb_144838_010 Hb_008918_030 Hb_008918_030 Hb_000060_070--Hb_008918_030 Hb_000261_300 Hb_000261_300 Hb_012707_020--Hb_000261_300 Hb_006615_210 Hb_006615_210 Hb_012707_020--Hb_006615_210 Hb_093543_010 Hb_093543_010 Hb_012707_020--Hb_093543_010 Hb_006717_080 Hb_006717_080 Hb_012707_020--Hb_006717_080 Hb_040473_010 Hb_040473_010 Hb_012707_020--Hb_040473_010 Hb_000668_210 Hb_000668_210 Hb_002200_100--Hb_000668_210 Hb_154430_010 Hb_154430_010 Hb_002200_100--Hb_154430_010 Hb_003746_020 Hb_003746_020 Hb_002200_100--Hb_003746_020 Hb_004010_080 Hb_004010_080 Hb_002200_100--Hb_004010_080 Hb_002200_100--Hb_006111_040 Hb_130507_020 Hb_130507_020 Hb_002200_100--Hb_130507_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0215063 0.00966635 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0295937 0.0465654 0 0.0371509 0.292809

CAGE analysis