Hb_006615_210

Information

Type -
Description -
Location Contig6615: 118848-121143
Sequence    

Annotation

kegg
ID rcu:RCOM_1467100
description splicing factor, arginine/serine-rich 2,rnap interacting protein, putative
nr
ID XP_012080449.1
description PREDICTED: uncharacterized protein LOC105640677 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KGK3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11771 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006615_210 0.0 - - PREDICTED: uncharacterized protein LOC105640677 isoform X2 [Jatropha curcas]
2 Hb_012707_020 0.1919885192 - - -
3 Hb_000261_300 0.1934489503 - - -
4 Hb_001355_050 0.1934595527 - - -
5 Hb_003927_020 0.198541269 - - PREDICTED: uncharacterized protein LOC105782546 [Gossypium raimondii]
6 Hb_011218_030 0.205031687 - - hypothetical protein VITISV_002891 [Vitis vinifera]
7 Hb_001946_130 0.207631805 - - -
8 Hb_019654_170 0.2082148985 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 9 [Jatropha curcas]
9 Hb_006992_030 0.2112885512 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
10 Hb_000346_050 0.2141010045 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
11 Hb_000527_120 0.2189032869 - - hypothetical protein VITISV_027174 [Vitis vinifera]
12 Hb_150516_010 0.2199104074 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
13 Hb_008642_050 0.2216891684 - - -
14 Hb_093543_010 0.2243352364 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
15 Hb_005595_030 0.2254712862 - - hypothetical protein EUGRSUZ_A00624 [Eucalyptus grandis]
16 Hb_000375_250 0.2255162761 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
17 Hb_003169_040 0.2269795986 - - -
18 Hb_180214_010 0.2273622261 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
19 Hb_043792_030 0.2280616601 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
20 Hb_003302_010 0.2301004849 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_006615_210 Hb_006615_210 Hb_012707_020 Hb_012707_020 Hb_006615_210--Hb_012707_020 Hb_000261_300 Hb_000261_300 Hb_006615_210--Hb_000261_300 Hb_001355_050 Hb_001355_050 Hb_006615_210--Hb_001355_050 Hb_003927_020 Hb_003927_020 Hb_006615_210--Hb_003927_020 Hb_011218_030 Hb_011218_030 Hb_006615_210--Hb_011218_030 Hb_001946_130 Hb_001946_130 Hb_006615_210--Hb_001946_130 Hb_012707_020--Hb_000261_300 Hb_093543_010 Hb_093543_010 Hb_012707_020--Hb_093543_010 Hb_006717_080 Hb_006717_080 Hb_012707_020--Hb_006717_080 Hb_040473_010 Hb_040473_010 Hb_012707_020--Hb_040473_010 Hb_012717_030 Hb_012717_030 Hb_012707_020--Hb_012717_030 Hb_022256_070 Hb_022256_070 Hb_000261_300--Hb_022256_070 Hb_000261_300--Hb_006717_080 Hb_000527_120 Hb_000527_120 Hb_000261_300--Hb_000527_120 Hb_000375_250 Hb_000375_250 Hb_000261_300--Hb_000375_250 Hb_005595_030 Hb_005595_030 Hb_001355_050--Hb_005595_030 Hb_001355_050--Hb_003927_020 Hb_006992_030 Hb_006992_030 Hb_001355_050--Hb_006992_030 Hb_150516_010 Hb_150516_010 Hb_001355_050--Hb_150516_010 Hb_001880_020 Hb_001880_020 Hb_001355_050--Hb_001880_020 Hb_043792_030 Hb_043792_030 Hb_001355_050--Hb_043792_030 Hb_000167_070 Hb_000167_070 Hb_003927_020--Hb_000167_070 Hb_003927_020--Hb_001880_020 Hb_003927_020--Hb_005595_030 Hb_003927_020--Hb_006992_030 Hb_000346_050 Hb_000346_050 Hb_003927_020--Hb_000346_050 Hb_011218_030--Hb_001946_130 Hb_011218_030--Hb_000527_120 Hb_003302_010 Hb_003302_010 Hb_011218_030--Hb_003302_010 Hb_003687_160 Hb_003687_160 Hb_011218_030--Hb_003687_160 Hb_003291_030 Hb_003291_030 Hb_011218_030--Hb_003291_030 Hb_001946_130--Hb_003291_030 Hb_001366_260 Hb_001366_260 Hb_001946_130--Hb_001366_260 Hb_007543_020 Hb_007543_020 Hb_001946_130--Hb_007543_020 Hb_011649_030 Hb_011649_030 Hb_001946_130--Hb_011649_030 Hb_000820_100 Hb_000820_100 Hb_001946_130--Hb_000820_100 Hb_001946_130--Hb_000527_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.122447 0.0534936 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0525072 0 0 0.132948 0.505831

CAGE analysis