Hb_022256_070

Information

Type -
Description -
Location Contig22256: 60901-62115
Sequence    

Annotation

kegg
ID cam:101509306
description enzymatic polyprotein-like
nr
ID XP_012066591.1
description PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID W9QD67
description Uncharacterized protein OS=Morus notabilis GN=L484_012687 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon gag protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022256_070 0.0 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
2 Hb_000527_120 0.1865325444 - - hypothetical protein VITISV_027174 [Vitis vinifera]
3 Hb_000261_300 0.1940559879 - - -
4 Hb_023020_070 0.1998588538 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003020_300 0.2073492522 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001946_130 0.2098042773 - - -
7 Hb_106070_010 0.2229751915 - - PREDICTED: uncharacterized protein LOC105793196 [Gossypium raimondii]
8 Hb_001866_090 0.2294897539 - - hypothetical protein VITISV_023491 [Vitis vinifera]
9 Hb_000014_190 0.2369989965 - - Phytoene dehydrogenase, putative [Ricinus communis]
10 Hb_001925_070 0.2378290557 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
11 Hb_002110_110 0.2387099835 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
12 Hb_001366_260 0.2414496615 - - T4.15 [Malus x robusta]
13 Hb_000963_090 0.2416299823 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
14 Hb_000300_310 0.2417756029 - - PREDICTED: uncharacterized protein LOC104896902 [Beta vulgaris subsp. vulgaris]
15 Hb_000173_110 0.2422698972 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
16 Hb_027337_030 0.2436238426 - - PREDICTED: uncharacterized protein LOC104602841 [Nelumbo nucifera]
17 Hb_006717_080 0.2438122243 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
18 Hb_011472_050 0.2467102953 - - -
19 Hb_010565_030 0.2481704684 - - hypothetical protein VITISV_006810 [Vitis vinifera]
20 Hb_000366_030 0.2486747513 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Jatropha curcas]

Gene co-expression network

sample Hb_022256_070 Hb_022256_070 Hb_000527_120 Hb_000527_120 Hb_022256_070--Hb_000527_120 Hb_000261_300 Hb_000261_300 Hb_022256_070--Hb_000261_300 Hb_023020_070 Hb_023020_070 Hb_022256_070--Hb_023020_070 Hb_003020_300 Hb_003020_300 Hb_022256_070--Hb_003020_300 Hb_001946_130 Hb_001946_130 Hb_022256_070--Hb_001946_130 Hb_106070_010 Hb_106070_010 Hb_022256_070--Hb_106070_010 Hb_000173_110 Hb_000173_110 Hb_000527_120--Hb_000173_110 Hb_142522_040 Hb_142522_040 Hb_000527_120--Hb_142522_040 Hb_001366_260 Hb_001366_260 Hb_000527_120--Hb_001366_260 Hb_000820_100 Hb_000820_100 Hb_000527_120--Hb_000820_100 Hb_009434_060 Hb_009434_060 Hb_000527_120--Hb_009434_060 Hb_007543_020 Hb_007543_020 Hb_000527_120--Hb_007543_020 Hb_012707_020 Hb_012707_020 Hb_000261_300--Hb_012707_020 Hb_006615_210 Hb_006615_210 Hb_000261_300--Hb_006615_210 Hb_006717_080 Hb_006717_080 Hb_000261_300--Hb_006717_080 Hb_000261_300--Hb_000527_120 Hb_000375_250 Hb_000375_250 Hb_000261_300--Hb_000375_250 Hb_000300_310 Hb_000300_310 Hb_023020_070--Hb_000300_310 Hb_000608_360 Hb_000608_360 Hb_023020_070--Hb_000608_360 Hb_000254_120 Hb_000254_120 Hb_023020_070--Hb_000254_120 Hb_000963_090 Hb_000963_090 Hb_023020_070--Hb_000963_090 Hb_023020_070--Hb_000527_120 Hb_000320_360 Hb_000320_360 Hb_003020_300--Hb_000320_360 Hb_006940_020 Hb_006940_020 Hb_003020_300--Hb_006940_020 Hb_000992_020 Hb_000992_020 Hb_003020_300--Hb_000992_020 Hb_007534_030 Hb_007534_030 Hb_003020_300--Hb_007534_030 Hb_000175_270 Hb_000175_270 Hb_003020_300--Hb_000175_270 Hb_002110_110 Hb_002110_110 Hb_003020_300--Hb_002110_110 Hb_003291_030 Hb_003291_030 Hb_001946_130--Hb_003291_030 Hb_001946_130--Hb_001366_260 Hb_001946_130--Hb_007543_020 Hb_011649_030 Hb_011649_030 Hb_001946_130--Hb_011649_030 Hb_001946_130--Hb_000820_100 Hb_001946_130--Hb_000527_120 Hb_106070_010--Hb_003291_030 Hb_003786_010 Hb_003786_010 Hb_106070_010--Hb_003786_010 Hb_008484_020 Hb_008484_020 Hb_106070_010--Hb_008484_020 Hb_000084_140 Hb_000084_140 Hb_106070_010--Hb_000084_140 Hb_106070_010--Hb_006940_020 Hb_004208_010 Hb_004208_010 Hb_106070_010--Hb_004208_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.218031 0.132101 0.0675209 0.0175482 0.0673753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.119918 0 0 0.176302 0.520948

CAGE analysis