Hb_023020_070

Information

Type -
Description -
Location Contig23020: 33386-39692
Sequence    

Annotation

kegg
ID rcu:RCOM_1318880
description hypothetical protein
nr
ID XP_002529273.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9STF4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1318880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023020_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_022256_070 0.1998588538 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
3 Hb_000300_310 0.204396388 - - PREDICTED: uncharacterized protein LOC104896902 [Beta vulgaris subsp. vulgaris]
4 Hb_000608_360 0.2044231586 - - calreticulin, putative [Ricinus communis]
5 Hb_000254_120 0.2130523477 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000963_090 0.2205767271 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
7 Hb_000527_120 0.2217750283 - - hypothetical protein VITISV_027174 [Vitis vinifera]
8 Hb_001907_080 0.2249857469 - - PREDICTED: uncharacterized protein LOC105628749 [Jatropha curcas]
9 Hb_000732_180 0.233895565 - - Uncharacterized protein TCM_030007 [Theobroma cacao]
10 Hb_002043_100 0.2341353315 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001508_030 0.2370330173 - - hypothetical protein VITISV_029808 [Vitis vinifera]
12 Hb_006277_080 0.2381511457 - - PREDICTED: uncharacterized protein LOC105649701 [Jatropha curcas]
13 Hb_001300_160 0.2382216412 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]
14 Hb_001946_130 0.2427409573 - - -
15 Hb_004724_180 0.2433160421 - - PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas]
16 Hb_000173_110 0.2436874232 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
17 Hb_010632_010 0.2440550651 - - PREDICTED: bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial [Jatropha curcas]
18 Hb_001377_210 0.2442528642 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
19 Hb_024677_010 0.2454180438 - - superoxide dismutase [fe], putative [Ricinus communis]
20 Hb_000092_060 0.2454452887 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]

Gene co-expression network

sample Hb_023020_070 Hb_023020_070 Hb_022256_070 Hb_022256_070 Hb_023020_070--Hb_022256_070 Hb_000300_310 Hb_000300_310 Hb_023020_070--Hb_000300_310 Hb_000608_360 Hb_000608_360 Hb_023020_070--Hb_000608_360 Hb_000254_120 Hb_000254_120 Hb_023020_070--Hb_000254_120 Hb_000963_090 Hb_000963_090 Hb_023020_070--Hb_000963_090 Hb_000527_120 Hb_000527_120 Hb_023020_070--Hb_000527_120 Hb_022256_070--Hb_000527_120 Hb_000261_300 Hb_000261_300 Hb_022256_070--Hb_000261_300 Hb_003020_300 Hb_003020_300 Hb_022256_070--Hb_003020_300 Hb_001946_130 Hb_001946_130 Hb_022256_070--Hb_001946_130 Hb_106070_010 Hb_106070_010 Hb_022256_070--Hb_106070_010 Hb_000014_190 Hb_000014_190 Hb_000300_310--Hb_000014_190 Hb_000300_310--Hb_000963_090 Hb_078477_060 Hb_078477_060 Hb_000300_310--Hb_078477_060 Hb_002226_050 Hb_002226_050 Hb_000300_310--Hb_002226_050 Hb_001811_080 Hb_001811_080 Hb_000300_310--Hb_001811_080 Hb_000157_110 Hb_000157_110 Hb_000300_310--Hb_000157_110 Hb_004724_180 Hb_004724_180 Hb_000608_360--Hb_004724_180 Hb_003141_060 Hb_003141_060 Hb_000608_360--Hb_003141_060 Hb_000640_330 Hb_000640_330 Hb_000608_360--Hb_000640_330 Hb_006277_080 Hb_006277_080 Hb_000608_360--Hb_006277_080 Hb_001300_160 Hb_001300_160 Hb_000608_360--Hb_001300_160 Hb_002276_030 Hb_002276_030 Hb_000608_360--Hb_002276_030 Hb_001377_060 Hb_001377_060 Hb_000254_120--Hb_001377_060 Hb_003602_030 Hb_003602_030 Hb_000254_120--Hb_003602_030 Hb_002835_090 Hb_002835_090 Hb_000254_120--Hb_002835_090 Hb_001584_050 Hb_001584_050 Hb_000254_120--Hb_001584_050 Hb_005332_150 Hb_005332_150 Hb_000254_120--Hb_005332_150 Hb_011900_020 Hb_011900_020 Hb_000254_120--Hb_011900_020 Hb_010632_010 Hb_010632_010 Hb_000963_090--Hb_010632_010 Hb_000963_090--Hb_078477_060 Hb_000329_080 Hb_000329_080 Hb_000963_090--Hb_000329_080 Hb_002811_190 Hb_002811_190 Hb_000963_090--Hb_002811_190 Hb_000963_090--Hb_001811_080 Hb_001080_150 Hb_001080_150 Hb_000963_090--Hb_001080_150 Hb_000173_110 Hb_000173_110 Hb_000527_120--Hb_000173_110 Hb_142522_040 Hb_142522_040 Hb_000527_120--Hb_142522_040 Hb_001366_260 Hb_001366_260 Hb_000527_120--Hb_001366_260 Hb_000820_100 Hb_000820_100 Hb_000527_120--Hb_000820_100 Hb_009434_060 Hb_009434_060 Hb_000527_120--Hb_009434_060 Hb_007543_020 Hb_007543_020 Hb_000527_120--Hb_007543_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0593457 0.173057 0.0229245 0.0143591 0.0502798
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0326577 0 0 0.102609 0.375621

CAGE analysis