Hb_000261_300

Information

Type -
Description -
Location Contig261: 263958-264928
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0010508
description uv radiation resistance-associated gene isoform x4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_300 0.0 - - -
2 Hb_012707_020 0.1768339102 - - -
3 Hb_006615_210 0.1934489503 - - PREDICTED: uncharacterized protein LOC105640677 isoform X2 [Jatropha curcas]
4 Hb_022256_070 0.1940559879 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
5 Hb_006717_080 0.2268322496 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
6 Hb_000527_120 0.2398655094 - - hypothetical protein VITISV_027174 [Vitis vinifera]
7 Hb_000375_250 0.2485495906 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
8 Hb_000300_310 0.2550403711 - - PREDICTED: uncharacterized protein LOC104896902 [Beta vulgaris subsp. vulgaris]
9 Hb_001946_130 0.2558693243 - - -
10 Hb_100332_020 0.2564749494 - - PREDICTED: uncharacterized protein LOC105168695 [Sesamum indicum]
11 Hb_062671_010 0.2584160661 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
12 Hb_093543_010 0.2650617291 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
13 Hb_023020_070 0.2750309337 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007885_110 0.2790916395 - - PREDICTED: uncharacterized protein LOC104109376 [Nicotiana tomentosiformis]
15 Hb_000392_410 0.2807970351 - - PREDICTED: uncharacterized protein LOC104882159 [Vitis vinifera]
16 Hb_000832_010 0.2866603428 - - hypothetical protein VITISV_005044 [Vitis vinifera]
17 Hb_005765_020 0.2877164636 - - -
18 Hb_006992_030 0.288598443 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
19 Hb_033594_050 0.2886992528 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
20 Hb_011218_030 0.2902306034 - - hypothetical protein VITISV_002891 [Vitis vinifera]

Gene co-expression network

sample Hb_000261_300 Hb_000261_300 Hb_012707_020 Hb_012707_020 Hb_000261_300--Hb_012707_020 Hb_006615_210 Hb_006615_210 Hb_000261_300--Hb_006615_210 Hb_022256_070 Hb_022256_070 Hb_000261_300--Hb_022256_070 Hb_006717_080 Hb_006717_080 Hb_000261_300--Hb_006717_080 Hb_000527_120 Hb_000527_120 Hb_000261_300--Hb_000527_120 Hb_000375_250 Hb_000375_250 Hb_000261_300--Hb_000375_250 Hb_012707_020--Hb_006615_210 Hb_093543_010 Hb_093543_010 Hb_012707_020--Hb_093543_010 Hb_012707_020--Hb_006717_080 Hb_040473_010 Hb_040473_010 Hb_012707_020--Hb_040473_010 Hb_012717_030 Hb_012717_030 Hb_012707_020--Hb_012717_030 Hb_001355_050 Hb_001355_050 Hb_006615_210--Hb_001355_050 Hb_003927_020 Hb_003927_020 Hb_006615_210--Hb_003927_020 Hb_011218_030 Hb_011218_030 Hb_006615_210--Hb_011218_030 Hb_001946_130 Hb_001946_130 Hb_006615_210--Hb_001946_130 Hb_022256_070--Hb_000527_120 Hb_023020_070 Hb_023020_070 Hb_022256_070--Hb_023020_070 Hb_003020_300 Hb_003020_300 Hb_022256_070--Hb_003020_300 Hb_022256_070--Hb_001946_130 Hb_106070_010 Hb_106070_010 Hb_022256_070--Hb_106070_010 Hb_006717_080--Hb_000527_120 Hb_000300_310 Hb_000300_310 Hb_006717_080--Hb_000300_310 Hb_000014_190 Hb_000014_190 Hb_006717_080--Hb_000014_190 Hb_078477_060 Hb_078477_060 Hb_006717_080--Hb_078477_060 Hb_000173_110 Hb_000173_110 Hb_006717_080--Hb_000173_110 Hb_000527_120--Hb_000173_110 Hb_142522_040 Hb_142522_040 Hb_000527_120--Hb_142522_040 Hb_001366_260 Hb_001366_260 Hb_000527_120--Hb_001366_260 Hb_000820_100 Hb_000820_100 Hb_000527_120--Hb_000820_100 Hb_009434_060 Hb_009434_060 Hb_000527_120--Hb_009434_060 Hb_007543_020 Hb_007543_020 Hb_000527_120--Hb_007543_020 Hb_003494_180 Hb_003494_180 Hb_000375_250--Hb_003494_180 Hb_031201_010 Hb_031201_010 Hb_000375_250--Hb_031201_010 Hb_001856_110 Hb_001856_110 Hb_000375_250--Hb_001856_110 Hb_007205_020 Hb_007205_020 Hb_000375_250--Hb_007205_020 Hb_002845_020 Hb_002845_020 Hb_000375_250--Hb_002845_020 Hb_057321_010 Hb_057321_010 Hb_000375_250--Hb_057321_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.395932 0.192274 0 0 0.101984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.263031 0 0 0.458825 1.03398

CAGE analysis