Hb_040473_010

Information

Type -
Description -
Location Contig40473: 1-435
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08730g
description POPTRDRAFT_751384; hypothetical protein
nr
ID XP_002299564.2
description hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GKP2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s08730g PE=4 SV=2
Gene Ontology
ID GO:0003676
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_040473_010 0.0 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
2 Hb_035651_010 0.1705301757 - - receptor-kinase, putative [Ricinus communis]
3 Hb_000028_380 0.1823194878 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
4 Hb_002973_120 0.1912117858 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
5 Hb_002529_070 0.1943906944 - - PREDICTED: putative late blight resistance protein homolog R1B-19 [Pyrus x bretschneideri]
6 Hb_007885_110 0.1985956994 - - PREDICTED: uncharacterized protein LOC104109376 [Nicotiana tomentosiformis]
7 Hb_006111_040 0.2037915747 - - PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]
8 Hb_000968_070 0.2069763311 - - -
9 Hb_005920_030 0.2110003009 - - putative polyprotein [Oryza sativa Japonica Group]
10 Hb_008055_030 0.2140851827 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
11 Hb_002311_260 0.2162505496 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
12 Hb_000123_340 0.2186025196 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
13 Hb_003994_070 0.218986783 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
14 Hb_001793_030 0.2211643458 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
15 Hb_009851_090 0.2213425692 - - Protein ABIL2, putative [Ricinus communis]
16 Hb_127552_050 0.2215088324 - - hypothetical protein VITISV_030752 [Vitis vinifera]
17 Hb_002874_030 0.2269088788 - - hypothetical protein JCGZ_07001 [Jatropha curcas]
18 Hb_060658_010 0.2273202839 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
19 Hb_030885_010 0.2273963818 - - -
20 Hb_069147_010 0.2279144545 desease resistance Gene Name: zf-BED PREDICTED: probable disease resistance protein At4g27220 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_040473_010 Hb_040473_010 Hb_035651_010 Hb_035651_010 Hb_040473_010--Hb_035651_010 Hb_000028_380 Hb_000028_380 Hb_040473_010--Hb_000028_380 Hb_002973_120 Hb_002973_120 Hb_040473_010--Hb_002973_120 Hb_002529_070 Hb_002529_070 Hb_040473_010--Hb_002529_070 Hb_007885_110 Hb_007885_110 Hb_040473_010--Hb_007885_110 Hb_006111_040 Hb_006111_040 Hb_040473_010--Hb_006111_040 Hb_004520_010 Hb_004520_010 Hb_035651_010--Hb_004520_010 Hb_004312_020 Hb_004312_020 Hb_035651_010--Hb_004312_020 Hb_020831_070 Hb_020831_070 Hb_035651_010--Hb_020831_070 Hb_003994_070 Hb_003994_070 Hb_035651_010--Hb_003994_070 Hb_009851_090 Hb_009851_090 Hb_035651_010--Hb_009851_090 Hb_005920_030 Hb_005920_030 Hb_035651_010--Hb_005920_030 Hb_013420_070 Hb_013420_070 Hb_000028_380--Hb_013420_070 Hb_001496_050 Hb_001496_050 Hb_000028_380--Hb_001496_050 Hb_000968_070 Hb_000968_070 Hb_000028_380--Hb_000968_070 Hb_001320_020 Hb_001320_020 Hb_000028_380--Hb_001320_020 Hb_000028_380--Hb_007885_110 Hb_001793_040 Hb_001793_040 Hb_002973_120--Hb_001793_040 Hb_001385_070 Hb_001385_070 Hb_002973_120--Hb_001385_070 Hb_170878_020 Hb_170878_020 Hb_002973_120--Hb_170878_020 Hb_008055_030 Hb_008055_030 Hb_002973_120--Hb_008055_030 Hb_127552_050 Hb_127552_050 Hb_002973_120--Hb_127552_050 Hb_002973_120--Hb_000968_070 Hb_002016_130 Hb_002016_130 Hb_002529_070--Hb_002016_130 Hb_009848_060 Hb_009848_060 Hb_002529_070--Hb_009848_060 Hb_030885_010 Hb_030885_010 Hb_002529_070--Hb_030885_010 Hb_001005_040 Hb_001005_040 Hb_002529_070--Hb_001005_040 Hb_002529_070--Hb_170878_020 Hb_004052_060 Hb_004052_060 Hb_002529_070--Hb_004052_060 Hb_007885_110--Hb_008055_030 Hb_007885_110--Hb_005920_030 Hb_007885_110--Hb_004520_010 Hb_001856_280 Hb_001856_280 Hb_007885_110--Hb_001856_280 Hb_007885_110--Hb_035651_010 Hb_019654_170 Hb_019654_170 Hb_007885_110--Hb_019654_170 Hb_151401_010 Hb_151401_010 Hb_006111_040--Hb_151401_010 Hb_006111_040--Hb_002529_070 Hb_000011_470 Hb_000011_470 Hb_006111_040--Hb_000011_470 Hb_001981_020 Hb_001981_020 Hb_006111_040--Hb_001981_020 Hb_007533_050 Hb_007533_050 Hb_006111_040--Hb_007533_050 Hb_006455_020 Hb_006455_020 Hb_006111_040--Hb_006455_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.304059 0.120737 0.310793 0 0.130837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.1705 0.13392 0 0.848715 2.65809

CAGE analysis