Hb_000028_380

Information

Type -
Description -
Location Contig28: 346872-352035
Sequence    

Annotation

kegg
ID rcu:RCOM_1341360
description hypothetical protein
nr
ID XP_009760314.1
description PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID M8CAR5
description Putative pentatricopeptide repeat-containing protein OS=Aegilops tauschii GN=F775_00434 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29211: 342442-355204
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_380 0.0 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
2 Hb_040473_010 0.1823194878 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
3 Hb_013420_070 0.1961935488 - - hypothetical protein EUGRSUZ_I01852 [Eucalyptus grandis]
4 Hb_001496_050 0.20537252 - - yth domain-containing protein, putative [Ricinus communis]
5 Hb_000968_070 0.2221646934 - - -
6 Hb_001320_020 0.242325518 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
7 Hb_007885_110 0.2447073844 - - PREDICTED: uncharacterized protein LOC104109376 [Nicotiana tomentosiformis]
8 Hb_003994_070 0.2461653385 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
9 Hb_062317_020 0.2505949235 - - conserved hypothetical protein [Ricinus communis]
10 Hb_035651_010 0.2522706861 - - receptor-kinase, putative [Ricinus communis]
11 Hb_002447_100 0.2549320505 - - hypothetical protein POPTR_0009s06260g [Populus trichocarpa]
12 Hb_155423_010 0.2555420415 - - -
13 Hb_060658_010 0.2555913958 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
14 Hb_005920_030 0.2576892616 - - putative polyprotein [Oryza sativa Japonica Group]
15 Hb_003375_050 0.2657934421 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_012707_020 0.2659673608 - - -
17 Hb_001355_060 0.2662599777 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
18 Hb_008055_030 0.266781922 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
19 Hb_005154_090 0.2671463646 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_151401_010 0.2688961615 - - -

Gene co-expression network

sample Hb_000028_380 Hb_000028_380 Hb_040473_010 Hb_040473_010 Hb_000028_380--Hb_040473_010 Hb_013420_070 Hb_013420_070 Hb_000028_380--Hb_013420_070 Hb_001496_050 Hb_001496_050 Hb_000028_380--Hb_001496_050 Hb_000968_070 Hb_000968_070 Hb_000028_380--Hb_000968_070 Hb_001320_020 Hb_001320_020 Hb_000028_380--Hb_001320_020 Hb_007885_110 Hb_007885_110 Hb_000028_380--Hb_007885_110 Hb_035651_010 Hb_035651_010 Hb_040473_010--Hb_035651_010 Hb_002973_120 Hb_002973_120 Hb_040473_010--Hb_002973_120 Hb_002529_070 Hb_002529_070 Hb_040473_010--Hb_002529_070 Hb_040473_010--Hb_007885_110 Hb_006111_040 Hb_006111_040 Hb_040473_010--Hb_006111_040 Hb_001542_010 Hb_001542_010 Hb_013420_070--Hb_001542_010 Hb_010863_070 Hb_010863_070 Hb_013420_070--Hb_010863_070 Hb_172486_010 Hb_172486_010 Hb_013420_070--Hb_172486_010 Hb_002447_100 Hb_002447_100 Hb_013420_070--Hb_002447_100 Hb_003994_070 Hb_003994_070 Hb_013420_070--Hb_003994_070 Hb_001496_050--Hb_001320_020 Hb_001496_050--Hb_000968_070 Hb_062317_020 Hb_062317_020 Hb_001496_050--Hb_062317_020 Hb_008055_030 Hb_008055_030 Hb_001496_050--Hb_008055_030 Hb_000811_090 Hb_000811_090 Hb_001496_050--Hb_000811_090 Hb_007793_030 Hb_007793_030 Hb_000968_070--Hb_007793_030 Hb_000968_070--Hb_001320_020 Hb_155423_010 Hb_155423_010 Hb_000968_070--Hb_155423_010 Hb_006807_010 Hb_006807_010 Hb_000968_070--Hb_006807_010 Hb_000968_070--Hb_062317_020 Hb_001320_020--Hb_062317_020 Hb_007520_070 Hb_007520_070 Hb_001320_020--Hb_007520_070 Hb_001320_020--Hb_007793_030 Hb_007885_110--Hb_008055_030 Hb_005920_030 Hb_005920_030 Hb_007885_110--Hb_005920_030 Hb_004520_010 Hb_004520_010 Hb_007885_110--Hb_004520_010 Hb_001856_280 Hb_001856_280 Hb_007885_110--Hb_001856_280 Hb_007885_110--Hb_035651_010 Hb_019654_170 Hb_019654_170 Hb_007885_110--Hb_019654_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0575658 0 0.0508339 0 0.0236702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0493845 0 0 0.109285 0.397886

CAGE analysis