Hb_013420_070

Information

Type -
Description -
Location Contig13420: 12124-12560
Sequence    

Annotation

kegg
ID rcu:RCOM_2119300
description hypothetical protein
nr
ID KCW56099.1
description hypothetical protein EUGRSUZ_I01852 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059AQQ4
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01852 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013420_070 0.0 - - hypothetical protein EUGRSUZ_I01852 [Eucalyptus grandis]
2 Hb_001542_010 0.1747012806 - - hypothetical protein, partial [Pseudomonas fluorescens]
3 Hb_010863_070 0.1853588098 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
4 Hb_172486_010 0.1944818784 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
5 Hb_000028_380 0.1961935488 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
6 Hb_002447_100 0.1980322042 - - hypothetical protein POPTR_0009s06260g [Populus trichocarpa]
7 Hb_003994_070 0.1981528107 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
8 Hb_149345_010 0.1995151267 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
9 Hb_011358_010 0.2041117476 - - -
10 Hb_001355_060 0.206488267 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
11 Hb_002598_030 0.2085920996 - - -
12 Hb_112791_030 0.2151713642 - - Uncharacterized protein TCM_027940 [Theobroma cacao]
13 Hb_151401_010 0.2169255918 - - -
14 Hb_147604_010 0.2185046701 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
15 Hb_000193_090 0.2186350534 - - cysteine protease, putative [Ricinus communis]
16 Hb_006040_140 0.2195741433 - - hypothetical protein NitaMp105 [Nicotiana tabacum]
17 Hb_145080_010 0.2199756748 - - PREDICTED: uncharacterized protein LOC105643750 [Jatropha curcas]
18 Hb_001174_050 0.2235230831 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_155423_010 0.2258992644 - - -
20 Hb_007590_030 0.2276691138 - - PREDICTED: iridoid synthase [Jatropha curcas]

Gene co-expression network

sample Hb_013420_070 Hb_013420_070 Hb_001542_010 Hb_001542_010 Hb_013420_070--Hb_001542_010 Hb_010863_070 Hb_010863_070 Hb_013420_070--Hb_010863_070 Hb_172486_010 Hb_172486_010 Hb_013420_070--Hb_172486_010 Hb_000028_380 Hb_000028_380 Hb_013420_070--Hb_000028_380 Hb_002447_100 Hb_002447_100 Hb_013420_070--Hb_002447_100 Hb_003994_070 Hb_003994_070 Hb_013420_070--Hb_003994_070 Hb_002598_030 Hb_002598_030 Hb_001542_010--Hb_002598_030 Hb_147604_010 Hb_147604_010 Hb_001542_010--Hb_147604_010 Hb_001542_010--Hb_002447_100 Hb_149345_010 Hb_149345_010 Hb_001542_010--Hb_149345_010 Hb_001250_030 Hb_001250_030 Hb_001542_010--Hb_001250_030 Hb_003311_020 Hb_003311_020 Hb_001542_010--Hb_003311_020 Hb_000289_090 Hb_000289_090 Hb_010863_070--Hb_000289_090 Hb_012796_030 Hb_012796_030 Hb_010863_070--Hb_012796_030 Hb_004372_050 Hb_004372_050 Hb_010863_070--Hb_004372_050 Hb_016734_040 Hb_016734_040 Hb_010863_070--Hb_016734_040 Hb_010863_070--Hb_149345_010 Hb_003440_080 Hb_003440_080 Hb_010863_070--Hb_003440_080 Hb_008484_020 Hb_008484_020 Hb_172486_010--Hb_008484_020 Hb_172486_010--Hb_149345_010 Hb_002620_040 Hb_002620_040 Hb_172486_010--Hb_002620_040 Hb_001459_020 Hb_001459_020 Hb_172486_010--Hb_001459_020 Hb_003291_030 Hb_003291_030 Hb_172486_010--Hb_003291_030 Hb_029510_060 Hb_029510_060 Hb_172486_010--Hb_029510_060 Hb_040473_010 Hb_040473_010 Hb_000028_380--Hb_040473_010 Hb_001496_050 Hb_001496_050 Hb_000028_380--Hb_001496_050 Hb_000968_070 Hb_000968_070 Hb_000028_380--Hb_000968_070 Hb_001320_020 Hb_001320_020 Hb_000028_380--Hb_001320_020 Hb_007885_110 Hb_007885_110 Hb_000028_380--Hb_007885_110 Hb_155423_010 Hb_155423_010 Hb_002447_100--Hb_155423_010 Hb_007590_030 Hb_007590_030 Hb_002447_100--Hb_007590_030 Hb_112791_030 Hb_112791_030 Hb_002447_100--Hb_112791_030 Hb_145080_010 Hb_145080_010 Hb_002447_100--Hb_145080_010 Hb_011358_010 Hb_011358_010 Hb_002447_100--Hb_011358_010 Hb_009851_090 Hb_009851_090 Hb_003994_070--Hb_009851_090 Hb_003994_070--Hb_003311_020 Hb_003994_070--Hb_155423_010 Hb_035651_010 Hb_035651_010 Hb_003994_070--Hb_035651_010 Hb_005920_030 Hb_005920_030 Hb_003994_070--Hb_005920_030 Hb_003994_070--Hb_001250_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.684439 0 0.559707 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.26467 0 0 0.369719 3.46376

CAGE analysis