Hb_000968_070

Information

Type -
Description -
Location Contig968: 129797-140107
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000968_070 0.0 - - -
2 Hb_001496_050 0.1214083242 - - yth domain-containing protein, putative [Ricinus communis]
3 Hb_007793_030 0.1229754039 - - OSJNBa0074B10.6 [Oryza sativa Japonica Group]
4 Hb_001320_020 0.1599194878 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
5 Hb_155423_010 0.1601170128 - - -
6 Hb_006807_010 0.1613959498 - - hypothetical protein JCGZ_20881 [Jatropha curcas]
7 Hb_062317_020 0.1740006973 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002631_270 0.1779248235 transcription factor TF Family: MYB hypothetical protein POPTR_0005s09930g [Populus trichocarpa]
9 Hb_002973_120 0.180476987 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
10 Hb_009851_090 0.181331756 - - Protein ABIL2, putative [Ricinus communis]
11 Hb_005920_030 0.1830328551 - - putative polyprotein [Oryza sativa Japonica Group]
12 Hb_151870_010 0.1871485361 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
13 Hb_003994_070 0.1879842845 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
14 Hb_002447_100 0.1884924188 - - hypothetical protein POPTR_0009s06260g [Populus trichocarpa]
15 Hb_004312_020 0.1893074708 - - conserved hypothetical protein [Ricinus communis]
16 Hb_008055_030 0.1937821682 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
17 Hb_017225_030 0.1962088566 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
18 Hb_000567_270 0.1996500383 - - hypothetical protein L484_017162 [Morus notabilis]
19 Hb_000644_020 0.200545676 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
20 Hb_003311_020 0.2027840796 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000968_070 Hb_000968_070 Hb_001496_050 Hb_001496_050 Hb_000968_070--Hb_001496_050 Hb_007793_030 Hb_007793_030 Hb_000968_070--Hb_007793_030 Hb_001320_020 Hb_001320_020 Hb_000968_070--Hb_001320_020 Hb_155423_010 Hb_155423_010 Hb_000968_070--Hb_155423_010 Hb_006807_010 Hb_006807_010 Hb_000968_070--Hb_006807_010 Hb_062317_020 Hb_062317_020 Hb_000968_070--Hb_062317_020 Hb_001496_050--Hb_001320_020 Hb_001496_050--Hb_062317_020 Hb_008055_030 Hb_008055_030 Hb_001496_050--Hb_008055_030 Hb_000028_380 Hb_000028_380 Hb_001496_050--Hb_000028_380 Hb_000811_090 Hb_000811_090 Hb_001496_050--Hb_000811_090 Hb_006483_120 Hb_006483_120 Hb_007793_030--Hb_006483_120 Hb_008484_020 Hb_008484_020 Hb_007793_030--Hb_008484_020 Hb_003291_030 Hb_003291_030 Hb_007793_030--Hb_003291_030 Hb_182651_020 Hb_182651_020 Hb_007793_030--Hb_182651_020 Hb_002973_120 Hb_002973_120 Hb_007793_030--Hb_002973_120 Hb_001320_020--Hb_062317_020 Hb_007520_070 Hb_007520_070 Hb_001320_020--Hb_007520_070 Hb_001320_020--Hb_007793_030 Hb_001320_020--Hb_000028_380 Hb_002631_270 Hb_002631_270 Hb_155423_010--Hb_002631_270 Hb_003994_070 Hb_003994_070 Hb_155423_010--Hb_003994_070 Hb_009851_090 Hb_009851_090 Hb_155423_010--Hb_009851_090 Hb_002447_100 Hb_002447_100 Hb_155423_010--Hb_002447_100 Hb_151870_010 Hb_151870_010 Hb_155423_010--Hb_151870_010 Hb_000567_270 Hb_000567_270 Hb_155423_010--Hb_000567_270 Hb_006807_010--Hb_151870_010 Hb_006807_010--Hb_002631_270 Hb_000169_100 Hb_000169_100 Hb_006807_010--Hb_000169_100 Hb_006807_010--Hb_155423_010 Hb_017225_030 Hb_017225_030 Hb_006807_010--Hb_017225_030 Hb_029727_010 Hb_029727_010 Hb_006807_010--Hb_029727_010 Hb_062317_020--Hb_007520_070 Hb_062317_020--Hb_007793_030 Hb_034359_010 Hb_034359_010 Hb_062317_020--Hb_034359_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.181928 0.0393978 0.317378 0 0.129719
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.401412 1.52353

CAGE analysis