Hb_011218_030

Information

Type -
Description -
Location Contig11218: 26159-29026
Sequence    

Annotation

kegg
ID vvi:104882159
description uncharacterized LOC104882159
nr
ID CAN64963.1
description hypothetical protein VITISV_002891 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5AWA5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002891 PE=4 SV=1
Gene Ontology
ID GO:0000166
description hypothetical protein VITISV_002891

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011218_030 0.0 - - hypothetical protein VITISV_002891 [Vitis vinifera]
2 Hb_001946_130 0.1654747447 - - -
3 Hb_000527_120 0.1856594014 - - hypothetical protein VITISV_027174 [Vitis vinifera]
4 Hb_003302_010 0.2002678477 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
5 Hb_003687_160 0.2012239228 - - Ran GTPase binding protein, putative [Ricinus communis]
6 Hb_003291_030 0.2027841391 - - Gag-pol protein, putative [Solanum demissum]
7 Hb_006615_210 0.205031687 - - PREDICTED: uncharacterized protein LOC105640677 isoform X2 [Jatropha curcas]
8 Hb_000123_340 0.2109772555 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
9 Hb_004374_090 0.2116415294 transcription factor TF Family: HB PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
10 Hb_106070_010 0.2122016986 - - PREDICTED: uncharacterized protein LOC105793196 [Gossypium raimondii]
11 Hb_007201_010 0.2161844103 - - PREDICTED: uncharacterized protein LOC105631226 isoform X2 [Jatropha curcas]
12 Hb_004242_120 0.2175940013 - - Organic cation transporter, putative [Ricinus communis]
13 Hb_023738_010 0.2179931673 - - Concanavalin A-like lectin protein kinase family protein [Theobroma cacao]
14 Hb_000352_060 0.2190139598 - - RNA-directed DNA polymerase [Arachis hypogaea]
15 Hb_003633_120 0.2204114261 - - PREDICTED: uncharacterized protein LOC104880778 [Vitis vinifera]
16 Hb_000173_110 0.2207001921 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
17 Hb_005092_090 0.22109434 - - cold regulated protein [Manihot esculenta]
18 Hb_006787_070 0.224242202 - - PREDICTED: uncharacterized protein LOC104121706, partial [Nicotiana tomentosiformis]
19 Hb_007543_020 0.2243539182 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
20 Hb_011649_030 0.2246764119 - - hypothetical protein [Vitis hybrid cultivar]

Gene co-expression network

sample Hb_011218_030 Hb_011218_030 Hb_001946_130 Hb_001946_130 Hb_011218_030--Hb_001946_130 Hb_000527_120 Hb_000527_120 Hb_011218_030--Hb_000527_120 Hb_003302_010 Hb_003302_010 Hb_011218_030--Hb_003302_010 Hb_003687_160 Hb_003687_160 Hb_011218_030--Hb_003687_160 Hb_003291_030 Hb_003291_030 Hb_011218_030--Hb_003291_030 Hb_006615_210 Hb_006615_210 Hb_011218_030--Hb_006615_210 Hb_001946_130--Hb_003291_030 Hb_001366_260 Hb_001366_260 Hb_001946_130--Hb_001366_260 Hb_007543_020 Hb_007543_020 Hb_001946_130--Hb_007543_020 Hb_011649_030 Hb_011649_030 Hb_001946_130--Hb_011649_030 Hb_000820_100 Hb_000820_100 Hb_001946_130--Hb_000820_100 Hb_001946_130--Hb_000527_120 Hb_000173_110 Hb_000173_110 Hb_000527_120--Hb_000173_110 Hb_142522_040 Hb_142522_040 Hb_000527_120--Hb_142522_040 Hb_000527_120--Hb_001366_260 Hb_000527_120--Hb_000820_100 Hb_009434_060 Hb_009434_060 Hb_000527_120--Hb_009434_060 Hb_000527_120--Hb_007543_020 Hb_023738_010 Hb_023738_010 Hb_003302_010--Hb_023738_010 Hb_080033_020 Hb_080033_020 Hb_003302_010--Hb_080033_020 Hb_144045_010 Hb_144045_010 Hb_003302_010--Hb_144045_010 Hb_000512_050 Hb_000512_050 Hb_003302_010--Hb_000512_050 Hb_005092_090 Hb_005092_090 Hb_003302_010--Hb_005092_090 Hb_000060_130 Hb_000060_130 Hb_003302_010--Hb_000060_130 Hb_000123_340 Hb_000123_340 Hb_003687_160--Hb_000123_340 Hb_004242_120 Hb_004242_120 Hb_003687_160--Hb_004242_120 Hb_000360_010 Hb_000360_010 Hb_003687_160--Hb_000360_010 Hb_004109_130 Hb_004109_130 Hb_003687_160--Hb_004109_130 Hb_003687_160--Hb_011649_030 Hb_127552_050 Hb_127552_050 Hb_003687_160--Hb_127552_050 Hb_003291_030--Hb_011649_030 Hb_008484_020 Hb_008484_020 Hb_003291_030--Hb_008484_020 Hb_000574_330 Hb_000574_330 Hb_003291_030--Hb_000574_330 Hb_000352_060 Hb_000352_060 Hb_003291_030--Hb_000352_060 Hb_003291_030--Hb_003687_160 Hb_012707_020 Hb_012707_020 Hb_006615_210--Hb_012707_020 Hb_000261_300 Hb_000261_300 Hb_006615_210--Hb_000261_300 Hb_001355_050 Hb_001355_050 Hb_006615_210--Hb_001355_050 Hb_003927_020 Hb_003927_020 Hb_006615_210--Hb_003927_020 Hb_006615_210--Hb_001946_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0101944 0.0959732 0.0777069 0.021834 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0463449 0 0 0.0435324 0.423552

CAGE analysis