Hb_011892_010

Information

Type -
Description -
Location Contig11892: 24746-27943
Sequence    

Annotation

kegg
ID tcc:TCM_028292
description DNA/RNA polymerases superfamily protein
nr
ID XP_007023888.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061G9E7
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_028292 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011892_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_150516_010 0.1297729027 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
3 Hb_011931_090 0.135777755 - - -
4 Hb_000405_010 0.1479276463 - - hypothetical protein JCGZ_15779 [Jatropha curcas]
5 Hb_000522_030 0.1526296387 - - hypothetical protein VITISV_006017 [Vitis vinifera]
6 Hb_000011_470 0.1565557363 - - PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]
7 Hb_029238_030 0.1566645942 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
8 Hb_094002_010 0.1623590799 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
9 Hb_000346_050 0.1631049324 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
10 Hb_019654_170 0.1658560365 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 9 [Jatropha curcas]
11 Hb_001383_080 0.1710379653 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]
12 Hb_049285_010 0.1712221912 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
13 Hb_001880_020 0.1731286256 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
14 Hb_000167_070 0.1737769567 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
15 Hb_005623_060 0.1751837371 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_003414_040 0.1762710414 - - hypothetical protein VITISV_016691 [Vitis vinifera]
17 Hb_043792_030 0.1778049711 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
18 Hb_008055_030 0.1868327296 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
19 Hb_003927_020 0.1879010427 - - PREDICTED: uncharacterized protein LOC105782546 [Gossypium raimondii]
20 Hb_001856_280 0.189063666 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]

Gene co-expression network

sample Hb_011892_010 Hb_011892_010 Hb_150516_010 Hb_150516_010 Hb_011892_010--Hb_150516_010 Hb_011931_090 Hb_011931_090 Hb_011892_010--Hb_011931_090 Hb_000405_010 Hb_000405_010 Hb_011892_010--Hb_000405_010 Hb_000522_030 Hb_000522_030 Hb_011892_010--Hb_000522_030 Hb_000011_470 Hb_000011_470 Hb_011892_010--Hb_000011_470 Hb_029238_030 Hb_029238_030 Hb_011892_010--Hb_029238_030 Hb_005623_060 Hb_005623_060 Hb_150516_010--Hb_005623_060 Hb_150516_010--Hb_000522_030 Hb_150516_010--Hb_011931_090 Hb_150516_010--Hb_000405_010 Hb_000346_050 Hb_000346_050 Hb_150516_010--Hb_000346_050 Hb_019654_170 Hb_019654_170 Hb_150516_010--Hb_019654_170 Hb_011931_090--Hb_000405_010 Hb_011931_090--Hb_000522_030 Hb_011931_090--Hb_005623_060 Hb_014109_020 Hb_014109_020 Hb_011931_090--Hb_014109_020 Hb_023386_030 Hb_023386_030 Hb_011931_090--Hb_023386_030 Hb_054127_020 Hb_054127_020 Hb_000405_010--Hb_054127_020 Hb_000432_020 Hb_000432_020 Hb_000405_010--Hb_000432_020 Hb_000405_010--Hb_000522_030 Hb_027917_010 Hb_027917_010 Hb_000405_010--Hb_027917_010 Hb_000476_030 Hb_000476_030 Hb_000522_030--Hb_000476_030 Hb_000522_030--Hb_005623_060 Hb_000135_080 Hb_000135_080 Hb_000522_030--Hb_000135_080 Hb_000011_470--Hb_000405_010 Hb_000011_470--Hb_029238_030 Hb_000011_470--Hb_011931_090 Hb_000011_470--Hb_054127_020 Hb_151401_010 Hb_151401_010 Hb_000011_470--Hb_151401_010 Hb_001490_020 Hb_001490_020 Hb_029238_030--Hb_001490_020 Hb_003414_040 Hb_003414_040 Hb_029238_030--Hb_003414_040 Hb_049285_010 Hb_049285_010 Hb_029238_030--Hb_049285_010 Hb_029238_030--Hb_000405_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.03278 0.0240176 0 0 0.00560984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0114603 0 0.100002 0.51345

CAGE analysis