Hb_029238_030

Information

Type -
Description -
Location Contig29238: 41260-44611
Sequence    

Annotation

kegg
ID cmo:103489421
description uncharacterized LOC103489421
nr
ID XP_008446805.1
description PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0032550
description gag-pol polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029238_030 0.0 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
2 Hb_001490_020 0.1485842815 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
3 Hb_000011_470 0.1536012474 - - PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]
4 Hb_011892_010 0.1566645942 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_003414_040 0.1621271172 - - hypothetical protein VITISV_016691 [Vitis vinifera]
6 Hb_049285_010 0.171036971 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
7 Hb_000405_010 0.1795458737 - - hypothetical protein JCGZ_15779 [Jatropha curcas]
8 Hb_000920_020 0.1831552061 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
9 Hb_000432_020 0.1840188321 desease resistance Gene Name: Tropomyosin_1 PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
10 Hb_054127_020 0.189685056 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
11 Hb_062317_010 0.1897128874 - - conserved hypothetical protein [Ricinus communis]
12 Hb_022599_010 0.1933313278 - - Uncharacterized protein TCM_010507 [Theobroma cacao]
13 Hb_011931_090 0.1933554026 - - -
14 Hb_013420_050 0.1990937921 - - hypothetical protein (mitochondrion) [Vicia faba]
15 Hb_042463_070 0.2001361245 - - 60S ribosomal protein L16, putative [Ricinus communis]
16 Hb_006356_030 0.2022226416 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
17 Hb_009888_010 0.2025813348 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_000923_110 0.2030483916 - - PREDICTED: uncharacterized protein LOC102624489 [Citrus sinensis]
19 Hb_000100_120 0.2044807535 - - RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]
20 Hb_001383_080 0.2055554115 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_029238_030 Hb_029238_030 Hb_001490_020 Hb_001490_020 Hb_029238_030--Hb_001490_020 Hb_000011_470 Hb_000011_470 Hb_029238_030--Hb_000011_470 Hb_011892_010 Hb_011892_010 Hb_029238_030--Hb_011892_010 Hb_003414_040 Hb_003414_040 Hb_029238_030--Hb_003414_040 Hb_049285_010 Hb_049285_010 Hb_029238_030--Hb_049285_010 Hb_000405_010 Hb_000405_010 Hb_029238_030--Hb_000405_010 Hb_101462_010 Hb_101462_010 Hb_001490_020--Hb_101462_010 Hb_000336_130 Hb_000336_130 Hb_001490_020--Hb_000336_130 Hb_077242_020 Hb_077242_020 Hb_001490_020--Hb_077242_020 Hb_013420_050 Hb_013420_050 Hb_001490_020--Hb_013420_050 Hb_042463_070 Hb_042463_070 Hb_001490_020--Hb_042463_070 Hb_006040_020 Hb_006040_020 Hb_001490_020--Hb_006040_020 Hb_000011_470--Hb_000405_010 Hb_000011_470--Hb_011892_010 Hb_011931_090 Hb_011931_090 Hb_000011_470--Hb_011931_090 Hb_054127_020 Hb_054127_020 Hb_000011_470--Hb_054127_020 Hb_151401_010 Hb_151401_010 Hb_000011_470--Hb_151401_010 Hb_150516_010 Hb_150516_010 Hb_011892_010--Hb_150516_010 Hb_011892_010--Hb_011931_090 Hb_011892_010--Hb_000405_010 Hb_000522_030 Hb_000522_030 Hb_011892_010--Hb_000522_030 Hb_000432_020 Hb_000432_020 Hb_003414_040--Hb_000432_020 Hb_001383_080 Hb_001383_080 Hb_003414_040--Hb_001383_080 Hb_093388_010 Hb_093388_010 Hb_003414_040--Hb_093388_010 Hb_001250_030 Hb_001250_030 Hb_003414_040--Hb_001250_030 Hb_003311_020 Hb_003311_020 Hb_003414_040--Hb_003311_020 Hb_001793_040 Hb_001793_040 Hb_003414_040--Hb_001793_040 Hb_007533_050 Hb_007533_050 Hb_049285_010--Hb_007533_050 Hb_006356_030 Hb_006356_030 Hb_049285_010--Hb_006356_030 Hb_000923_110 Hb_000923_110 Hb_049285_010--Hb_000923_110 Hb_000567_270 Hb_000567_270 Hb_049285_010--Hb_000567_270 Hb_049285_010--Hb_000432_020 Hb_030987_010 Hb_030987_010 Hb_049285_010--Hb_030987_010 Hb_000405_010--Hb_011931_090 Hb_000405_010--Hb_054127_020 Hb_000405_010--Hb_000432_020 Hb_000405_010--Hb_000522_030 Hb_000405_010--Hb_150516_010 Hb_027917_010 Hb_027917_010 Hb_000405_010--Hb_027917_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0237614 0.00661368 0.00642793 0 0.0228328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0151314 0 0.060123 0.609981

CAGE analysis