Hb_002636_150

Information

Type -
Description -
Location Contig2636: 131191-132006
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002636_150 0.0 - - -
2 Hb_002815_050 0.2162712433 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
3 Hb_032258_020 0.2177464386 - - PREDICTED: amidase 1-like isoform X2 [Malus domestica]
4 Hb_007188_030 0.2228910092 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
5 Hb_002200_050 0.2316259578 - - unknown [Lotus japonicus]
6 Hb_003029_100 0.2317499793 - - -
7 Hb_005679_070 0.234292275 - - hypothetical protein M569_07741, partial [Genlisea aurea]
8 Hb_000181_150 0.2379165548 - - hypothetical protein PHAVU_011G1647000g, partial [Phaseolus vulgaris]
9 Hb_177103_010 0.2383678114 - - PREDICTED: histone H2AX [Elaeis guineensis]
10 Hb_000810_020 0.2394354093 - - -
11 Hb_000227_050 0.240584241 - - -
12 Hb_000329_560 0.2432929179 - - conserved hypothetical protein [Ricinus communis]
13 Hb_026228_010 0.2436388062 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000084_130 0.246803915 - - -
15 Hb_002079_040 0.2475444651 - - hypothetical protein VITISV_018542 [Vitis vinifera]
16 Hb_010565_040 0.2487114556 - - hypothetical protein POPTR_0015s05280g, partial [Populus trichocarpa]
17 Hb_003656_150 0.249375895 - - -
18 Hb_000160_160 0.2531296821 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
19 Hb_001998_140 0.253449332 - - -
20 Hb_022891_010 0.2566584463 - - chitinase-like protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_002636_150 Hb_002636_150 Hb_002815_050 Hb_002815_050 Hb_002636_150--Hb_002815_050 Hb_032258_020 Hb_032258_020 Hb_002636_150--Hb_032258_020 Hb_007188_030 Hb_007188_030 Hb_002636_150--Hb_007188_030 Hb_002200_050 Hb_002200_050 Hb_002636_150--Hb_002200_050 Hb_003029_100 Hb_003029_100 Hb_002636_150--Hb_003029_100 Hb_005679_070 Hb_005679_070 Hb_002636_150--Hb_005679_070 Hb_002815_050--Hb_005679_070 Hb_003030_040 Hb_003030_040 Hb_002815_050--Hb_003030_040 Hb_002815_050--Hb_007188_030 Hb_003656_150 Hb_003656_150 Hb_002815_050--Hb_003656_150 Hb_022891_010 Hb_022891_010 Hb_002815_050--Hb_022891_010 Hb_068014_010 Hb_068014_010 Hb_002815_050--Hb_068014_010 Hb_032258_020--Hb_002815_050 Hb_000181_150 Hb_000181_150 Hb_032258_020--Hb_000181_150 Hb_032258_020--Hb_022891_010 Hb_032258_020--Hb_003030_040 Hb_032258_020--Hb_007188_030 Hb_177103_010 Hb_177103_010 Hb_032258_020--Hb_177103_010 Hb_007188_030--Hb_003656_150 Hb_006198_090 Hb_006198_090 Hb_007188_030--Hb_006198_090 Hb_007188_030--Hb_177103_010 Hb_007188_030--Hb_003030_040 Hb_007188_030--Hb_005679_070 Hb_000160_160 Hb_000160_160 Hb_002200_050--Hb_000160_160 Hb_003688_110 Hb_003688_110 Hb_002200_050--Hb_003688_110 Hb_025190_010 Hb_025190_010 Hb_002200_050--Hb_025190_010 Hb_008447_030 Hb_008447_030 Hb_002200_050--Hb_008447_030 Hb_025288_010 Hb_025288_010 Hb_002200_050--Hb_025288_010 Hb_004709_020 Hb_004709_020 Hb_002200_050--Hb_004709_020 Hb_000289_080 Hb_000289_080 Hb_003029_100--Hb_000289_080 Hb_006995_010 Hb_006995_010 Hb_003029_100--Hb_006995_010 Hb_003029_100--Hb_003656_150 Hb_000086_190 Hb_000086_190 Hb_003029_100--Hb_000086_190 Hb_124141_010 Hb_124141_010 Hb_003029_100--Hb_124141_010 Hb_003029_100--Hb_006198_090 Hb_000329_560 Hb_000329_560 Hb_005679_070--Hb_000329_560 Hb_001998_140 Hb_001998_140 Hb_005679_070--Hb_001998_140 Hb_005085_030 Hb_005085_030 Hb_005679_070--Hb_005085_030 Hb_005679_070--Hb_068014_010 Hb_006663_090 Hb_006663_090 Hb_005679_070--Hb_006663_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.282954 0 0 3.52453 0.144471 5.82725
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.01142 1.59197 0 1.0994 1.6781

CAGE analysis